ENSG00000277481


Homo sapiens

Features
Gene ID: ENSG00000277481
  
Biological name :PKD1L3
  
Synonyms : PKD1L3 / polycystin 1 like 3, transient receptor potential channel interacting / Q7Z443
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q22.2
Gene start: 71929538
Gene end: 71999978
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSP00000480090
NCBI entrez gene - 342372     See in Manteia.
OMIM - 607895
RefSeq - XM_017023203
RefSeq - NM_181536
RefSeq - XM_017023201
RefSeq - XM_017023202
RefSeq Peptide - NP_853514
swissprot - Q7Z443
Ensembl - ENSG00000277481
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Pkd1l3ENSMUSG00000048827Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PKDREJ / Q9NTG1 / polycystin family receptor for egg jellyENSG0000013094318
PKD1 / P98161 / polycystin 1, transient receptor potential channel interactingENSG0000000871017
PKD1L1 / Q8TDX9 / polycystin 1 like 1, transient receptor potential channel interactingENSG0000015868316
PKD2 / Q13563 / polycystin 2, transient receptor potential cation channelENSG000001187626
PKD2L1 / Q9P0L9 / polycystin 2 like 1, transient receptor potential cation channelENSG000001075936
PKD2L2 / Q9NZM6 / polycystin 2 like 2, transient receptor potential cation channelENSG000000787955
PKD1L2 / Q7Z442 / polycystin 1 like 2 (gene/pseudogene)ENSG000001664732


Protein motifs (from Interpro)
Interpro ID Name
 IPR000203  GPS motif
 IPR000434  Polycystic kidney disease type 1 protein
 IPR001024  PLAT/LH2 domain
 IPR001304  C-type lectin-like
 IPR013122  Polycystin cation channel, PKD1/PKD2
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR036392  PLAT/LH2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001581 detection of chemical stimulus involved in sensory perception of sour taste ISS
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006812 cation transport ISS
 biological_processGO:0006816 calcium ion transport IEA
 biological_processGO:0050915 sensory perception of sour taste IMP
 biological_processGO:0050982 detection of mechanical stimulus IBA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 biological_processGO:0071468 cellular response to acidic pH ISS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0009986 cell surface ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034703 cation channel complex ISS
 cellular_componentGO:0043235 receptor complex ISS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005261 cation channel activity ISS
 molecular_functionGO:0005262 calcium channel activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008324 cation transmembrane transporter activity ISS
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0033040 sour taste receptor activity ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr