ENSMUSG00000048827


Mus musculus

Features
Gene ID: ENSMUSG00000048827
  
Biological name :Pkd1l3
  
Synonyms : Pkd1l3 / Polycystic kidney disease protein 1-like 3 / Q2EG98
  
Possible biological names infered from orthology : polycystin 1 like 3, transient receptor potential channel interacting / Q7Z443
  
Species: Mus musculus
  
Chr. number: 8
Strand: 1
Band: D3
Gene start: 109614517
Gene end: 109674386
  
Corresponding Affymetrix probe sets: 10575255 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000148592
Ensembl peptide - ENSMUSP00000051512
Ensembl peptide - ENSMUSP00000104865
Ensembl peptide - ENSMUSP00000148503
NCBI entrez gene - 244646     See in Manteia.
MGI - MGI:2664670
RefSeq - XM_017312832
RefSeq - XM_017312825
RefSeq - XM_017312826
RefSeq - XM_017312827
RefSeq - XM_017312828
RefSeq - XM_017312829
RefSeq - XM_017312830
RefSeq - NM_001039700
RefSeq - NM_001286454
RefSeq - NM_181544
RefSeq - XM_011248384
RefSeq - XM_017312821
RefSeq - XM_017312822
RefSeq - XM_017312823
RefSeq Peptide - NP_853522
RefSeq Peptide - NP_001034789
RefSeq Peptide - NP_001273383
swissprot - A2A258
swissprot - Q2EG98
swissprot - A0A1D5RLT9
Ensembl - ENSMUSG00000048827
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PKD1L3ENSG00000277481Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pkd1l2ENSMUSG0000003441626
Pkd1 / O08852 / Polycystin-1 / P98161* / polycystin 1, transient receptor potential channel interacting*ENSMUSG0000003285516
Pkdrej / polycystin family receptor for egg jelly / Q9NTG1*ENSMUSG0000005249615
Pkd1l1 / polycystin 1 like 1, transient receptor potential channel interacting / Q8TDX9*ENSMUSG0000004663414
Pkd2 / O35245 / Polycystin-2 / Q13563* / polycystin 2, transient receptor potential cation channel*ENSMUSG000000344626
A2A259 / Pkd2l1 / Polycystic kidney disease 2-like 1 protein / Q9P0L9* / polycystin 2 like 1, transient receptor potential cation channel*ENSMUSG000000375786
Pkd2l2 / Q9JLG4 / Polycystic kidney disease 2-like 2 protein / Q9NZM6* / polycystin 2 like 2, transient receptor potential cation channel*ENSMUSG000000145035


Protein motifs (from Interpro)
Interpro ID Name
 IPR000203  GPS motif
 IPR001024  PLAT/LH2 domain
 IPR003915  Polycystic kidney disease type 2 protein
 IPR013122  Polycystin cation channel, PKD1/PKD2
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR036392  PLAT/LH2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001581 detection of chemical stimulus involved in sensory perception of sour taste IDA
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006812 cation transport IDA
 biological_processGO:0006816 calcium ion transport IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0050915 sensory perception of sour taste ISO
 biological_processGO:0050982 detection of mechanical stimulus IBA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 biological_processGO:0071468 cellular response to acidic pH IDA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane ISO
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034703 cation channel complex IDA
 cellular_componentGO:0043235 receptor complex IDA
 molecular_functionGO:0005261 cation channel activity IDA
 molecular_functionGO:0005262 calcium channel activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008324 cation transmembrane transporter activity IDA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0033040 sour taste receptor activity IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001985 abnormal gustatory system physiology "anomalous perception of taste" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Pkd1l3tm1.1Abek/Pkd1l3tm1.1Abek,Pkd2l1tm1.1Yuni/Pkd2l1tm1.1Yuni
Genetic Background: involves: 129S/SvEv * C57BL/6 * CBA

 MP:0003477 abnormal nerve fiber response "anomaly in the electrophysiological recordings from a single or several nerve fiber(s)" [Nmice:Neuromice Consortium Submission]
Show

Allelic Composition: Pkd1l3tm1.1Abek/Pkd1l3tm1.1Abek,Pkd2l1tm1.1Yuni/Pkd2l1tm1.1Yuni
Genetic Background: involves: 129S/SvEv * C57BL/6 * CBA

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr