ENSMUSG00000034416


Mus musculus

Features
Gene ID: ENSMUSG00000034416
  
Biological name :Pkd1l2
  
Synonyms : Pkd1l2
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: E1
Gene start: 116995679
Gene end: 117082449
  
Corresponding Affymetrix probe sets: 10582025 (MoGene1.0st)   1454187_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000095977
Ensembl peptide - ENSMUSP00000104721
NCBI entrez gene - 76645     See in Manteia.
MGI - MGI:2664668
RefSeq - NM_029686
RefSeq Peptide - NP_083962
swissprot - E9QPG2
swissprot - E9Q4D4
Ensembl - ENSMUSG00000034416
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pkd1l2aENSDARG00000105344Danio rerio
 pkd1l2bENSDARG00000088121Danio rerio
 pkd1l2bENSDARG00000101214Danio rerio
 ENSGALG00000005435Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pkd1l3 / Q2EG98 / Polycystic kidney disease protein 1-like 3 / Q7Z443* / polycystin 1 like 3, transient receptor potential channel interacting*ENSMUSG0000004882723
Pkd1 / O08852 / Polycystin-1 / P98161* / polycystin 1, transient receptor potential channel interacting*ENSMUSG0000003285520
Pkdrej / polycystin family receptor for egg jelly / Q9NTG1*ENSMUSG0000005249619
Pkd1l1 / polycystin 1 like 1, transient receptor potential channel interacting / Q8TDX9*ENSMUSG0000004663415
Pkd2 / O35245 / Polycystin-2 / Q13563* / polycystin 2, transient receptor potential cation channel*ENSMUSG000000344627
A2A259 / Pkd2l1 / Polycystic kidney disease 2-like 1 protein / Q9P0L9* / polycystin 2 like 1, transient receptor potential cation channel*ENSMUSG000000375787
Pkd2l2 / Q9JLG4 / Polycystic kidney disease 2-like 2 protein / Q9NZM6* / polycystin 2 like 2, transient receptor potential cation channel*ENSMUSG000000145036


Protein motifs (from Interpro)
Interpro ID Name
 IPR000203  GPS motif
 IPR000922  D-galactoside/L-rhamnose binding SUEL lectin domain
 IPR001024  PLAT/LH2 domain
 IPR001304  C-type lectin-like
 IPR002859  PKD/REJ-like domain
 IPR003915  Polycystic kidney disease type 2 protein
 IPR013122  Polycystin cation channel, PKD1/PKD2
 IPR013783  Immunoglobulin-like fold
 IPR014010  REJ domain
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR035986  PKD domain superfamily
 IPR036392  PLAT/LH2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001303 abnormal lens morphology "malformed transparent structure of the eye responsible for focusing light rays" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:40203]
Show

Allelic Composition: Pdgfrbtm1b(EUCOMM)Hmgu/Pdgfrb+
Genetic Background: C57BL/6N-Pdgfrbtm1b(EUCOMM)Hmgu/H

 MP:0001926 female infertility "inability of female to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:34193]
Show

Allelic Composition: Pdgfrbtm1b(EUCOMM)Hmgu/Pdgfrb+
Genetic Background: C57BL/6N-Pdgfrbtm1b(EUCOMM)Hmgu/H

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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