ENSDARG00000105344


Danio rerio

Features
Gene ID: ENSDARG00000105344
  
Biological name :pkd1l2a
  
Synonyms : pkd1l2a / polycystic kidney disease 1 like 2a
  
Possible biological names infered from orthology : Pkd1l2
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 65177132
Gene end: 65236649
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000142251
Ensembl peptide - ENSDARP00000148326
NCBI entrez gene - 497373     See in Manteia.
RefSeq - XM_017357234
swissprot - A0A140LG73
ZFIN ID - ZDB-GENE-050208-89
Ensembl - ENSDARG00000105344
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000005435Gallus gallus
 Pkd1l2ENSMUSG00000034416Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pkd1l2b / polycystic kidney disease 1 like 2b / Pkd1l2*ENSDARG0000010121440
pkd1a / polycystic kidney disease 1a / PKD1* / P98161* / polycystin 1, transient receptor potential channel interacting*ENSDARG0000003041716
pkd1l2b / polycystic kidney disease 1 like 2b / Pkd1l2*ENSDARG0000008812115
pkd1b / polycystic kidney disease 1bENSDARG0000003302914
pkd2l1 / polycystic kidney disease 2-like 1 / A2A259* / Q9P0L9* / Polycystic kidney disease 2-like 1 protein * / polycystin 2 like 1, transient receptor potential cation channel*ENSDARG000000225036
pkd2 / Q6IVV8 / polycystic kidney disease 2 / Q13563* / O35245* / Polycystin-2 * / polycystin 2, transient receptor potential cation channel*ENSDARG000000140986


Protein motifs (from Interpro)
Interpro ID Name
 IPR000203  GPS motif
 IPR000601  PKD domain
 IPR000922  D-galactoside/L-rhamnose binding SUEL lectin domain
 IPR001024  PLAT/LH2 domain
 IPR001304  C-type lectin-like
 IPR002859  PKD/REJ-like domain
 IPR003915  Polycystic kidney disease type 2 protein
 IPR013122  Polycystin cation channel, PKD1/PKD2
 IPR013783  Immunoglobulin-like fold
 IPR014010  REJ domain
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR022409  PKD/Chitinase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0098869 cellular oxidant detoxification IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004096 catalase activity IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0020037 heme binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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