ENSDARG00000101214


Danio rerio

Features
Gene ID: ENSDARG00000101214
  
Biological name :pkd1l2b
  
Synonyms : pkd1l2b / polycystic kidney disease 1 like 2b
  
Possible biological names infered from orthology : Pkd1l2
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 67252880
Gene end: 67311294
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000105751
Ensembl peptide - ENSDARP00000105814
NCBI entrez gene - 100537993     See in Manteia.
RefSeq - XM_021478036
swissprot - E7F436
swissprot - E7F2U9
ZFIN ID - ZDB-GENE-141222-87
Ensembl - ENSDARG00000101214
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000005435Gallus gallus
 Pkd1l2ENSMUSG00000034416Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pkd1l2a / polycystic kidney disease 1 like 2a / Pkd1l2*ENSDARG0000010534452
pkd1l2b / polycystic kidney disease 1 like 2b / Pkd1l2*ENSDARG0000008812145
pkd1a / polycystic kidney disease 1a / PKD1* / P98161* / polycystin 1, transient receptor potential channel interacting*ENSDARG0000003041717
pkd1b / polycystic kidney disease 1bENSDARG0000003302915
pkd2l1 / polycystic kidney disease 2-like 1 / A2A259* / Q9P0L9* / Polycystic kidney disease 2-like 1 protein * / polycystin 2 like 1, transient receptor potential cation channel*ENSDARG000000225037
pkd2 / Q6IVV8 / polycystic kidney disease 2 / Q13563* / O35245* / Polycystin-2 * / polycystin 2, transient receptor potential cation channel*ENSDARG000000140987


Protein motifs (from Interpro)
Interpro ID Name
 IPR000203  GPS motif
 IPR000922  D-galactoside/L-rhamnose binding SUEL lectin domain
 IPR001024  PLAT/LH2 domain
 IPR001304  C-type lectin-like
 IPR003915  Polycystic kidney disease type 2 protein
 IPR013122  Polycystin cation channel, PKD1/PKD2
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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