ENSDARG00000022503


Danio rerio

Features
Gene ID: ENSDARG00000022503
  
Biological name :pkd2l1
  
Synonyms : pkd2l1 / polycystic kidney disease 2-like 1
  
Possible biological names infered from orthology : A2A259 / Polycystic kidney disease 2-like 1 protein / polycystin 2 like 1, transient receptor potential cation channel / Q9P0L9
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 25455319
Gene end: 25471376
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119061
swissprot - F1R6X2
ZFIN ID - ZDB-GENE-030616-558
Ensembl - ENSDARG00000022503
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PKD2L1ENSGALG00000005766Gallus gallus
 PKD2L1ENSG00000107593Homo sapiens
 A2A259ENSMUSG00000037578Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pkd2 / Q6IVV8 / polycystic kidney disease 2 / Q13563* / O35245* / Polycystin-2 * / polycystin 2, transient receptor potential cation channel*ENSDARG0000001409843
pkd1l2a / polycystic kidney disease 1 like 2a / Pkd1l2*ENSDARG0000010534420
pkd1l2b / polycystic kidney disease 1 like 2b / Pkd1l2*ENSDARG0000010121417
pkd1a / polycystic kidney disease 1a / PKD1* / P98161* / polycystin 1, transient receptor potential channel interacting*ENSDARG0000003041714
pkd1b / polycystic kidney disease 1bENSDARG0000003302913
pkd1l2b / polycystic kidney disease 1 like 2b / Pkd1l2*ENSDARG000000881211


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR003915  Polycystic kidney disease type 2 protein
 IPR011992  EF-hand domain pair
 IPR013122  Polycystin cation channel, PKD1/PKD2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007638 mechanosensory behavior IMP
 biological_processGO:0009612 response to mechanical stimulus IMP
 biological_processGO:0050982 detection of mechanical stimulus IBA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0016020 membrane IBA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005262 calcium channel activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005240 Kolmer-Agduhr neuron Kolmer-Agduhr neuron response to mechanical stimulus decreased process quality , abnormal
Kolmer-Agduhr neuron response to muscle activity decreased process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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