ENSG00000078795


Homo sapiens

Features
Gene ID: ENSG00000078795
  
Biological name :PKD2L2
  
Synonyms : PKD2L2 / polycystin 2 like 2, transient receptor potential cation channel / Q9NZM6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.2
Gene start: 137887968
Gene end: 137942747
  
Corresponding Affymetrix probe sets: 221118_at (Human Genome U133 Plus 2.0 Array)   224226_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000424725
Ensembl peptide - ENSP00000423926
Ensembl peptide - ENSP00000424885
Ensembl peptide - ENSP00000425513
Ensembl peptide - ENSP00000290431
Ensembl peptide - ENSP00000388060
Ensembl peptide - ENSP00000423382
NCBI entrez gene - 27039     See in Manteia.
OMIM - 604669
RefSeq - XM_017009345
RefSeq - NM_001258449
RefSeq - NM_001300921
RefSeq - NM_014386
RefSeq - XM_011543318
RefSeq - XM_011543321
RefSeq - XM_017009343
RefSeq - XM_017009344
RefSeq - NM_001258448
RefSeq Peptide - NP_055201
RefSeq Peptide - NP_001245377
RefSeq Peptide - NP_001245378
RefSeq Peptide - NP_001287850
swissprot - Q9NZM6
swissprot - D6RF71
swissprot - D6RBX8
Ensembl - ENSG00000078795
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PKD2L2ENSGALG00000006120Gallus gallus
 Pkd2l2ENSMUSG00000014503Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PKD2L1 / Q9P0L9 / polycystin 2 like 1, transient receptor potential cation channelENSG0000010759347
PKD2 / Q13563 / polycystin 2, transient receptor potential cation channelENSG0000011876246
PKDREJ / Q9NTG1 / polycystin family receptor for egg jellyENSG0000013094318
PKD1L1 / Q8TDX9 / polycystin 1 like 1, transient receptor potential channel interactingENSG0000015868316
PKD1 / P98161 / polycystin 1, transient receptor potential channel interactingENSG0000000871016
PKD1L3 / Q7Z443 / polycystin 1 like 3, transient receptor potential channel interactingENSG0000027748114
PKD1L2 / Q7Z442 / polycystin 1 like 2 (gene/pseudogene)ENSG000001664730


Protein motifs (from Interpro)
Interpro ID Name
 IPR003915  Polycystic kidney disease type 2 protein
 IPR013122  Polycystin cation channel, PKD1/PKD2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0050982 detection of mechanical stimulus IBA
 biological_processGO:0070588 calcium ion transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane TAS
 molecular_functionGO:0005262 calcium channel activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr