ENSG00000168267


Homo sapiens

Features
Gene ID: ENSG00000168267
  
Biological name :PTF1A
  
Synonyms : pancreas specific transcription factor, 1a / PTF1A / Q7RTS3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: p12.2
Gene start: 23192327
Gene end: 23194252
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSP00000365687
Ensembl peptide - ENSP00000492481
Ensembl peptide - ENSP00000492055
Ensembl peptide - ENSP00000491704
Ensembl peptide - ENSP00000491649
Ensembl peptide - ENSP00000491542
NCBI entrez gene - 256297     See in Manteia.
OMIM - 607194
RefSeq - NM_178161
RefSeq Peptide - NP_835455
swissprot - A0A1W2PQC4
swissprot - A0A1W2PPH2
swissprot - A0A1W2PRT5
swissprot - Q7RTS3
swissprot - A0A1W2PR29
swissprot - A0A1W2PQF5
Ensembl - ENSG00000168267
  
Related genetic diseases (OMIM): 609069 - Pancreatic and cerebellar agenesis, 609069
  615935 - Pancreatic agenesis 2, 615935

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ptf1aENSDARG00000014479Danio rerio
 PTF1AENSGALG00000027144Gallus gallus
 Ptf1aENSMUSG00000026735Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FERD3L / Q96RJ6 / Fer3 like bHLH transcription factorENSG0000014661816


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated ISS
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0009888 tissue development IDA
 biological_processGO:0010842 retina layer formation IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030902 hindbrain development IEA
 biological_processGO:0031016 pancreas development IEA
 biological_processGO:0031017 exocrine pancreas development IEA
 biological_processGO:0035881 amacrine cell differentiation IEA
 biological_processGO:0045165 cell fate commitment IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048384 retinoic acid receptor signaling pathway IEA
 biological_processGO:0048663 neuron fate commitment IEA
 biological_processGO:0048699 generation of neurons IEA
 biological_processGO:0060042 retina morphogenesis in camera-type eye IEA
 biological_processGO:0061074 regulation of neural retina development IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm ISS
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding ISS
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070888 E-box binding IEA


Pathways (from Reactome)
Pathway description
Regulation of gene expression in early pancreatic precursor cells


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000325 Triangular facies 
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 HP:0000331 Small chin 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000377 Abnormal form of ears "Abnormal form of the out part of the ear (also referred to as the auricle or pinna)." [HPO:curators]
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 HP:0000444 Beaked nose 
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 HP:0000609 Optic nerve hypoplasia 
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000857 Neonatal insulin-dependent diabetes mellitus 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001518 Low birth weight 
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 HP:0001522 Death in infancy 
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 HP:0001684 Secundum atrial septal defect 
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 HP:0002570 Steatorrhea 
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 HP:0003758 Reduced subcutaneous adipose tissue "The presence of an abnormally reduced amount of subcutaneous adipose tissue." [HPO:curators]
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 HP:0010557 Overlapping fingers "Overlapping of the fingers occuring as the result of a deviation of the fingers from their normal position." [HPO:curators]
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 HP:0012642 Cerebellar agenesis "Lack of development of the cerebellum." [HPO:probinson, pmid:20305277]
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 HP:0100800 Aplasia/Hypoplasia of the pancreas "A congential underdevelopment (aplasia or hypoplasia) of the pancreas." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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