ENSG00000174705


Homo sapiens

Features
Gene ID: ENSG00000174705
  
Biological name :SH3PXD2B
  
Synonyms : A1X283 / SH3 and PX domains 2B / SH3PXD2B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q35.1
Gene start: 172325000
Gene end: 172454523
  
Corresponding Affymetrix probe sets: 1562910_at (Human Genome U133 Plus 2.0 Array)   231823_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000309714
Ensembl peptide - ENSP00000490082
Ensembl peptide - ENSP00000430890
Ensembl peptide - ENSP00000428076
NCBI entrez gene - 285590     See in Manteia.
OMIM - 613293
RefSeq - XM_017009351
RefSeq - NM_001017995
RefSeq - NM_001308175
RefSeq Peptide - NP_001295104
RefSeq Peptide - NP_001017995
swissprot - H0YAU1
swissprot - A1X283
swissprot - A0A1B0GUF2
swissprot - G3V144
Ensembl - ENSG00000174705
  
Related genetic diseases (OMIM): 249420 - Frank-ter Haar syndrome, 249420
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sh3pxd2bENSDARG00000103251Danio rerio
 SH3PXD2BENSGALG00000002831Gallus gallus
 A2AAY5ENSMUSG00000040711Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5TCZ1 / SH3PXD2A / SH3 and PX domains 2AENSG0000010795743
NCF1 / P14598 / neutrophil cytosolic factor 1ENSG0000015851714
NOXO1 / Q8NFA2 / NADPH oxidase organizer 1ENSG000001964088


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR001683  Phox homologous domain
 IPR030512  SH3 and PX domain-containing protein 2B
 IPR034917  SH3 and PX domain-containing protein 2A
 IPR035477  SH3PXD2B, SH3 domain 1
 IPR035478  SH3PXD2B, SH3 domain 2
 IPR035479  SH3PXD2B, SH3 domain 3
 IPR035480  SH3PXD2B, SH3 domain 4
 IPR036028  SH3-like domain superfamily
 IPR036871  PX domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IMP
 biological_processGO:0001654 eye development IMP
 biological_processGO:0002051 osteoblast fate commitment IEA
 biological_processGO:0006801 superoxide metabolic process IDA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0010628 positive regulation of gene expression IEA
 biological_processGO:0022617 extracellular matrix disassembly IMP
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0040018 positive regulation of multicellular organism growth IEA
 biological_processGO:0043085 positive regulation of catalytic activity IEA
 biological_processGO:0045600 positive regulation of fat cell differentiation IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0051496 positive regulation of stress fiber assembly IEA
 biological_processGO:0055114 oxidation-reduction process IBA
 biological_processGO:0060348 bone development IMP
 biological_processGO:0060378 regulation of brood size IEA
 biological_processGO:0060612 adipose tissue development IEA
 biological_processGO:0071800 podosome assembly IBA
 biological_processGO:0072657 protein localization to membrane IDA
 biological_processGO:1904179 positive regulation of adipose tissue development IEA
 biological_processGO:1904888 cranial skeletal system development IEA
 cellular_componentGO:0002102 podosome IBA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0010314 phosphatidylinositol-5-phosphate binding IEA
 molecular_functionGO:0016176 superoxide-generating NADPH oxidase activator activity IBA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA
 molecular_functionGO:0042169 SH2 domain binding IEA
 molecular_functionGO:0070273 phosphatidylinositol-4-phosphate binding IEA
 molecular_functionGO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000212 Gingival hyperplasia 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000260 Wide anterior fontanel "Enlargement of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
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 HP:0000270 Delayed closure of fontanelles "Infants normally have two fontanels at birth, the diamond-shaped anterior fontanelle at the junction of the coronal and sagittal sutures, and the posterior fontanelle at the intersection of the occipital and parietal bones. The posterior fontanelle usually closes by the 8th week of life, and the anterior fontanel closes by the 18th month of life on average. This term applies if there is delay of closure of the fontanelles beyond the normal age." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000293 Full cheeks 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000490 Deep set eyes 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000557 Buphthalmos "Buphthalmos refers to a congenital open-angle glaucoma of the eye. The term buphthalmos (from Greek bous or ox and ophthalmos or eye) is descriptive of an enlarged eyeglobe resulting from increased intraocular pressure. The eyeglobe is especially prone to distension in newborns and infants because its collagen filaments are not as rigid as in adults and may easily be stretched." [HPO:curators]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000689 Dental malocclusion "Dental malocclusion refers to an abnormality of the occlusion, or alignment, of the teeth and the way the upper and lower teeth fit together, resulting in overcrowding of teeth or in abnormal bite patterns." [HPO:curators]
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000771 Gynecomastia 
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 HP:0000916 Broad clavicles "Increased breadth of the clavicles." [HPO:curators]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0001061 Acne 
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 HP:0001072 Thickened skin 
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 HP:0001090 Large eyes 
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 HP:0001156 Brachydactyly 
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001270 Motor retardation 
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 HP:0001385 Hip dysplasia 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001627 Cardiac abnormality "An abnormality of the `heart` (FMA:7088)." [HPO:probinson]
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 HP:0001634 Mitral valve prolapse 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001840 Metatarsus varus "Metatarsus varus (adductus) is one of the most common foot deformities, that is defined as a transverse plane deformity in Lisfranc s (tarsometatarsal) joints in which the metatarsals are deviated medially. The relationship between talus and calcaneus is normal. On inspection the toes angle abruptly towards the midline, creating a C-shaped lateral foot border with a prominent styloid process of the 5th metatarsal. The result is that the forefoot is twisted inwards relative to the heel, so that the sole faces the midline." [HPO:curators]
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 HP:0002645 Wormian bones 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002797 Osteolysis 
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 HP:0002808 Kyphosis 
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 HP:0002816 Genu recurvatum 
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 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
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 HP:0003026 Short long bones 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004568 Beaking of vertebral bodies 
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 HP:0004611 Anterior concavity of thoracic vertebrae 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005469 Occipital plagiocephaly "Occipital plagiocephaly can result from fusion or sclerosis of the lambdoid suture. If unilateral, this is accompanied by unilateral occipital flattening and bulging of the ispilateral frontal bone." [HPO:curators]
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 HP:0005731 Cortical irregularity "An abnormal irregularity of cortical bone." [HPO:curators]
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 HP:0006480 Premature loss of teeth 
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 HP:0006487 Bowing of the long bones 
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0010885 Aseptic necrosis "A disease where there is cellular death (necrosis) of bone components due to interruption of the blood supply." [HPO:sdoelken]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0012471 Thick vermilion border "Increased width of the "skin of vermilion border region of upper lip" (FMA:312645)." [HPO:probinson]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0040016 Prominent coccyx 
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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