ENSG00000158517


Homo sapiens

Features
Gene ID: ENSG00000158517
  
Biological name :NCF1
  
Synonyms : NCF1 / neutrophil cytosolic factor 1 / P14598
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q11.23
Gene start: 74773962
Gene end: 74789315
  
Corresponding Affymetrix probe sets: 204961_s_at (Human Genome U133 Plus 2.0 Array)   214084_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000392870
Ensembl peptide - ENSP00000484502
Ensembl peptide - ENSP00000401935
Ensembl peptide - ENSP00000289473
NCBI entrez gene - 653361     See in Manteia.
OMIM - 608512
RefSeq - NM_000265
RefSeq Peptide - NP_000256
swissprot - C9J155
swissprot - A0A087X1W0
swissprot - H7C1S1
swissprot - P14598
Ensembl - ENSG00000158517
  
Related genetic diseases (OMIM): 233700 - Chronic granulomatous disease due to deficiency of NCF-1, 233700
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ncf1ENSDARG00000033735Danio rerio
 NCF1ENSGALG00000001189Gallus gallus
 Ncf1ENSMUSG00000015950Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5TCZ1 / SH3PXD2A / SH3 and PX domains 2AENSG0000010795733
A1X283 / SH3PXD2B / SH3 and PX domains 2BENSG0000017470532
NOXO1 / Q8NFA2 / NADPH oxidase organizer 1ENSG0000019640822


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR001655  Neutrophil cytosol factor 1
 IPR001683  Phox homologous domain
 IPR015039  NADPH oxidase subunit p47Phox, C-terminal
 IPR032136  Neutrophil cytosol factor 1, C-terminal
 IPR034909  Neutrophil cytosol factor 1, PX domain
 IPR035756  Neutrophil cytosol factor 1, first SH3 domain
 IPR035757  Neutrophil cytosol factor 1, second SH3 domain
 IPR036028  SH3-like domain superfamily
 IPR036871  PX domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS
 biological_processGO:0006612 protein targeting to membrane IDA
 biological_processGO:0006801 superoxide metabolic process TAS
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0006968 cellular defense response TAS
 biological_processGO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling IMP
 biological_processGO:0022900 electron transport chain IEA
 biological_processGO:0034599 cellular response to oxidative stress TAS
 biological_processGO:0034614 cellular response to reactive oxygen species IDA
 biological_processGO:0042554 superoxide anion generation IMP
 biological_processGO:0045087 innate immune response TAS
 biological_processGO:0045454 cell redox homeostasis TAS
 biological_processGO:0045730 respiratory burst IEA
 biological_processGO:0045741 positive regulation of epidermal growth factor-activated receptor activity IMP
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0046330 positive regulation of JNK cascade IMP
 biological_processGO:0048010 vascular endothelial growth factor receptor signaling pathway TAS
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0071276 cellular response to cadmium ion IMP
 biological_processGO:0071800 podosome assembly IBA
 biological_processGO:1900745 positive regulation of p38MAPK cascade IMP
 cellular_componentGO:0002102 podosome IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0019898 extrinsic component of membrane IDA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0032010 phagolysosome TAS
 cellular_componentGO:0043020 NADPH oxidase complex IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0009055 electron transfer activity TAS
 molecular_functionGO:0016175 superoxide-generating NADPH oxidase activity IEA
 molecular_functionGO:0016176 superoxide-generating NADPH oxidase activator activity IBA
 molecular_functionGO:0017124 SH3 domain binding IPI
 molecular_functionGO:0035091 phosphatidylinositol binding IEA
 molecular_functionGO:0043325 phosphatidylinositol-3,4-bisphosphate binding IDA


Pathways (from Reactome)
Pathway description
ROS, RNS production in phagocytes
Cross-presentation of particulate exogenous antigens (phagosomes)
Detoxification of Reactive Oxygen Species
VEGFA-VEGFR2 Pathway
RHO GTPases Activate NADPH Oxidases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000230 Gingivitis 
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 HP:0000246 Sinusitis 
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 HP:0000388 Otitis media 
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000976 Eczematoid dermatitis 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001034 Hyperpigmented macules 
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 HP:0001287 Meningitis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001945 Fever 
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 HP:0002021 Pyloric stenosis 
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 HP:0002024 Malabsorption 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002723 Absence of bactericidal oxidative respiratory burst in phagocytes 
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 HP:0002724 Aspergillus infections 
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 HP:0002726 Staphylococcus aureus infections 
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 HP:0002740 E. coli infections 
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 HP:0002741 Serratia marcescens infections 
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 HP:0002742 Klebsiella infections 
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 HP:0002754 Osteomyelitis 
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 HP:0002840 Lymphadenitis 
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 HP:0002842 Burkholderia cepacia infections 
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 HP:0002955 Tissue biopsy shows granulomas 
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 HP:0003203 Negative nitroblue tetrazolium (NBT) reduction test 
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 HP:0003206 Decreased activity of NADPH oxidase 
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 HP:0003621 Juvenile onset 
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 HP:0005224 Rectal abscess 
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 HP:0005406 Recurrent bacterial skin infections 
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 HP:0006510 Chronic obstructive pulmonary disease 
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 HP:0006532 Pneumonia, recurrent episodes 
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 HP:0007417 Discoid lupus erythematosus 
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 HP:0100523 Liver abscess "The presence of an `abscess` (MPATH:608) of the `liver` (FMA:7197)." [HPO:probinson]
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 HP:0100533 Inflammatory abnormality of the eye "Inflammation of the eye, parts of the eye or the periorbital region." [HPO:sdoelken]
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 HP:0100658 Cellulitis 
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 HP:0100721 Mediastinal lymphadenopathy 
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 HP:0100806 Sepsis 
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100365 NCF4 / Q15080 / neutrophil cytosolic factor 4  / complex
 ENSG00000051523 CYBA / P13498 / cytochrome b-245 alpha chain  / complex
 ENSG00000136238 RAC1 / P63000 / Rac family small GTPase 1  / reaction / complex
 ENSG00000128340 RAC2 / P15153 / Rac family small GTPase 2  / complex / reaction
 ENSG00000116701 NCF2 / P19878 / neutrophil cytosolic factor 2  / complex
 ENSG00000074771 NOX3 / Q9HBY0 / NADPH oxidase 3  / complex
 ENSG00000165168 CYBB / P04839 / cytochrome b-245 beta chain  / complex
 ENSG00000188747 NOXA1 / Q86UR1 / NADPH oxidase activator 1  / complex






 

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