ENSG00000116701


Homo sapiens

Features
Gene ID: ENSG00000116701
  
Biological name :NCF2
  
Synonyms : NCF2 / neutrophil cytosolic factor 2 / P19878
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q25.3
Gene start: 183555563
Gene end: 183590876
  
Corresponding Affymetrix probe sets: 209949_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000397228
Ensembl peptide - ENSP00000356506
Ensembl peptide - ENSP00000399294
Ensembl peptide - ENSP00000407217
Ensembl peptide - ENSP00000406198
Ensembl peptide - ENSP00000356505
NCBI entrez gene - 4688     See in Manteia.
OMIM - 608515
RefSeq - XM_011509581
RefSeq - NM_000433
RefSeq - NM_001127651
RefSeq - NM_001190789
RefSeq - NM_001190794
RefSeq - XM_005245207
RefSeq - XM_011509580
RefSeq Peptide - NP_000424
RefSeq Peptide - NP_001121123
RefSeq Peptide - NP_001177718
RefSeq Peptide - NP_001177723
swissprot - P19878
swissprot - A0A0S2Z457
swissprot - B1ALB7
swissprot - B1ALB6
Ensembl - ENSG00000116701
  
Related genetic diseases (OMIM): 233710 - Chronic granulomatous disease due to deficiency of NCF-2, 233710
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ncf2ENSDARG00000005821Danio rerio
 NCF2ENSGALG00000004700Gallus gallus
 Ncf2ENSMUSG00000026480Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NOXA1 / Q86UR1 / NADPH oxidase activator 1ENSG0000018874728


Protein motifs (from Interpro)
Interpro ID Name
 IPR000270  PB1 domain
 IPR001452  SH3 domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR019734  Tetratricopeptide repeat
 IPR034885  Neutrophil cytosol factor 2, PB1 domain
 IPR034889  Neutrophil cytosol factor 2
 IPR035546  Neutrophil cytosol factor 2, SH3 domain 1
 IPR036028  SH3-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS
 biological_processGO:0006801 superoxide metabolic process TAS
 biological_processGO:0006909 phagocytosis IEA
 biological_processGO:0006968 cellular defense response TAS
 biological_processGO:0022900 electron transport chain IEA
 biological_processGO:0034599 cellular response to oxidative stress TAS
 biological_processGO:0042554 superoxide anion generation TAS
 biological_processGO:0043085 positive regulation of catalytic activity IEA
 biological_processGO:0045087 innate immune response TAS
 biological_processGO:0045454 cell redox homeostasis TAS
 biological_processGO:0045730 respiratory burst TAS
 biological_processGO:0048010 vascular endothelial growth factor receptor signaling pathway TAS
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0001669 acrosomal vesicle IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0032010 phagolysosome TAS
 cellular_componentGO:0043020 NADPH oxidase complex TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IPI
 molecular_functionGO:0009055 electron transfer activity TAS
 molecular_functionGO:0016175 superoxide-generating NADPH oxidase activity IEA
 molecular_functionGO:0016176 superoxide-generating NADPH oxidase activator activity IEA
 molecular_functionGO:0048365 Rac GTPase binding IEA


Pathways (from Reactome)
Pathway description
ROS, RNS production in phagocytes
Cross-presentation of particulate exogenous antigens (phagosomes)
Detoxification of Reactive Oxygen Species
VEGFA-VEGFR2 Pathway
RHO GTPases Activate NADPH Oxidases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000230 Gingivitis 
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 HP:0000246 Sinusitis 
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 HP:0000388 Otitis media 
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000976 Eczematoid dermatitis 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001034 Hyperpigmented macules 
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 HP:0001287 Meningitis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001945 Fever 
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 HP:0002021 Pyloric stenosis 
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 HP:0002024 Malabsorption 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002723 Absence of bactericidal oxidative respiratory burst in phagocytes 
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 HP:0002724 Aspergillus infections 
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 HP:0002726 Staphylococcus aureus infections 
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 HP:0002740 E. coli infections 
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 HP:0002741 Serratia marcescens infections 
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 HP:0002742 Klebsiella infections 
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 HP:0002754 Osteomyelitis 
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 HP:0002840 Lymphadenitis 
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 HP:0002842 Burkholderia cepacia infections 
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 HP:0002955 Tissue biopsy shows granulomas 
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 HP:0003203 Negative nitroblue tetrazolium (NBT) reduction test 
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 HP:0003206 Decreased activity of NADPH oxidase 
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 HP:0003621 Juvenile onset 
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 HP:0005224 Rectal abscess 
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 HP:0005406 Recurrent bacterial skin infections 
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 HP:0006510 Chronic obstructive pulmonary disease 
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 HP:0006532 Pneumonia, recurrent episodes 
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 HP:0007417 Discoid lupus erythematosus 
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 HP:0100523 Liver abscess "The presence of an `abscess` (MPATH:608) of the `liver` (FMA:7197)." [HPO:probinson]
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 HP:0100533 Inflammatory abnormality of the eye "Inflammation of the eye, parts of the eye or the periorbital region." [HPO:sdoelken]
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 HP:0100658 Cellulitis 
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 HP:0100721 Mediastinal lymphadenopathy 
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 HP:0100806 Sepsis 
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100365 NCF4 / Q15080 / neutrophil cytosolic factor 4  / complex
 ENSG00000051523 CYBA / P13498 / cytochrome b-245 alpha chain  / complex
 ENSG00000158517 NCF1 / P14598 / neutrophil cytosolic factor 1  / complex
 ENSG00000136238 RAC1 / P63000 / Rac family small GTPase 1  / reaction / complex
 ENSG00000074771 NOX3 / Q9HBY0 / NADPH oxidase 3  / complex
 ENSG00000165168 CYBB / P04839 / cytochrome b-245 beta chain  / complex
 ENSG00000128340 RAC2 / P15153 / Rac family small GTPase 2  / reaction / complex






 

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