ENSG00000100365


Homo sapiens

Features
Gene ID: ENSG00000100365
  
Biological name :NCF4
  
Synonyms : NCF4 / neutrophil cytosolic factor 4 / Q15080
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: 1
Band: q12.3
Gene start: 36860988
Gene end: 36878015
  
Corresponding Affymetrix probe sets: 205147_x_at (Human Genome U133 Plus 2.0 Array)   207677_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000414958
Ensembl peptide - ENSP00000248899
Ensembl peptide - ENSP00000380334
NCBI entrez gene - 4689     See in Manteia.
OMIM - 601488
RefSeq - XM_017028808
RefSeq - NM_000631
RefSeq - NM_013416
RefSeq Peptide - NP_000622
RefSeq Peptide - NP_038202
swissprot - Q15080
swissprot - B0QY04
Ensembl - ENSG00000100365
  
Related genetic diseases (OMIM): 613960 - ?Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type III, 613960
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ncf4ENSDARG00000040812Danio rerio
 NCF4ENSGALG00000038141Gallus gallus
 Ncf4ENSMUSG00000071715Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000270  PB1 domain
 IPR000919  Neutrophil cytosol factor P40
 IPR001452  SH3 domain
 IPR001683  Phox homologous domain
 IPR034853  Neutrophil cytosol factor P40, PB1 domain
 IPR034912  Neutrophil cytosol factor 4, PX domain
 IPR035541  Neutrophil cytosol factor P40, SH3 domain
 IPR036028  SH3-like domain superfamily
 IPR036871  PX domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002479 antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent TAS
 biological_processGO:0006909 phagocytosis IEA
 biological_processGO:0006955 immune response TAS
 biological_processGO:0016192 vesicle-mediated transport IBA
 biological_processGO:0034599 cellular response to oxidative stress TAS
 biological_processGO:0043085 positive regulation of catalytic activity IEA
 biological_processGO:0045454 cell redox homeostasis TAS
 biological_processGO:0045730 respiratory burst IEA
 biological_processGO:0048010 vascular endothelial growth factor receptor signaling pathway TAS
 biological_processGO:0055114 oxidation-reduction process TAS
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005802 trans-Golgi network IBA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0032010 phagolysosome TAS
 cellular_componentGO:0043020 NADPH oxidase complex IDA
 molecular_functionGO:0005086 ARF guanyl-nucleotide exchange factor activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0016176 superoxide-generating NADPH oxidase activator activity IMP
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IDA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA
 molecular_functionGO:0046983 protein dimerization activity TAS


Pathways (from Reactome)
Pathway description
ROS, RNS production in phagocytes
Cross-presentation of particulate exogenous antigens (phagosomes)
Detoxification of Reactive Oxygen Species
VEGFA-VEGFR2 Pathway
RHO GTPases Activate NADPH Oxidases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000230 Gingivitis 
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 HP:0000246 Sinusitis 
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 HP:0000388 Otitis media 
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001034 Hyperpigmented macules 
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 HP:0001287 Meningitis 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001874 Abnormality of neutrophil 
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 HP:0001945 Fever 
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 HP:0002014 Diarrhea 
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 HP:0002021 Pyloric stenosis 
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 HP:0002024 Malabsorption 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0006510 Chronic obstructive pulmonary disease 
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 HP:0011107 Recurrent aphthous stomatitis "Recurrent episodes of ulceration of the oral mucosa." [HPO:probinson]
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 HP:0011108 Recurrent sinusitis "A `recurrent` (PATO:0000427) form of `sinusitis` (HP:0000246)." [HPO:probinson]
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 HP:0011127 Perioral eczema "A type of `eczema` (HP:0000964) that occurs in the lips and perioral area." [HPO:probinson]
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 HP:0100523 Liver abscess "The presence of an `abscess` (MPATH:608) of the `liver` (FMA:7197)." [HPO:probinson]
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 HP:0100533 Inflammatory abnormality of the eye "Inflammation of the eye, parts of the eye or the periorbital region." [HPO:sdoelken]
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 HP:0100721 Mediastinal lymphadenopathy 
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 HP:0100806 Sepsis 
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 HP:0200042 skin ulcer "A discontinuity of the skin exhibiting complete loss of the epidermis and often portions of the dermis and even subcutaneous fat." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000165168 CYBB / P04839 / cytochrome b-245 beta chain  / complex
 ENSG00000128340 RAC2 / P15153 / Rac family small GTPase 2  / reaction / complex
 ENSG00000136238 RAC1 / P63000 / Rac family small GTPase 1  / complex / reaction
 ENSG00000116701 NCF2 / P19878 / neutrophil cytosolic factor 2  / complex
 ENSG00000051523 CYBA / P13498 / cytochrome b-245 alpha chain  / complex
 ENSG00000158517 NCF1 / P14598 / neutrophil cytosolic factor 1  / complex






 

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