ENSG00000175505


Homo sapiens

Features
Gene ID: ENSG00000175505
  
Biological name :CLCF1
  
Synonyms : cardiotrophin like cytokine factor 1 / CLCF1 / Q9UBD9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q13.2
Gene start: 67364168
Gene end: 67374177
  
Corresponding Affymetrix probe sets: 219500_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000309338
Ensembl peptide - ENSP00000434122
NCBI entrez gene - 23529     See in Manteia.
OMIM - 607672
RefSeq - NM_001166212
RefSeq - NM_013246
RefSeq Peptide - NP_001159684
RefSeq Peptide - NP_037378
swissprot - Q9UBD9
Ensembl - ENSG00000175505
  
Related genetic diseases (OMIM): 610313 - Cold-induced sweating syndrome 2, 610313
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 clcf1ENSDARG00000076140Danio rerio
 Clcf1ENSMUSG00000040663Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009079  Four-helical cytokine-like, core
 IPR010681  Plethodontid receptivity factor PRF/cardiotrophin-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002639 positive regulation of immunoglobulin production ISS
 biological_processGO:0007166 cell surface receptor signaling pathway ISS
 biological_processGO:0007259 JAK-STAT cascade ISS
 biological_processGO:0008284 positive regulation of cell proliferation IDA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway NAS
 biological_processGO:0030183 B cell differentiation ISS
 biological_processGO:0030890 positive regulation of B cell proliferation IBA
 biological_processGO:0042531 positive regulation of tyrosine phosphorylation of STAT protein TAS
 biological_processGO:0043524 negative regulation of neuron apoptotic process IDA
 biological_processGO:0048295 positive regulation of isotype switching to IgE isotypes ISS
 biological_processGO:0048711 positive regulation of astrocyte differentiation ISS
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0097058 CRLF-CLCF1 complex IDA
 cellular_componentGO:0097059 CNTFR-CLCF1 complex IDA
 molecular_functionGO:0005102 signaling receptor binding IPI
 molecular_functionGO:0005125 cytokine activity IDA
 molecular_functionGO:0005127 ciliary neurotrophic factor receptor binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008083 growth factor activity TAS
 molecular_functionGO:0046982 protein heterodimerization activity IDA


Pathways (from Reactome)
Pathway description
IL-6-type cytokine receptor ligand interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000293 Full cheeks 
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 HP:0000343 Long philtrum 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000445 Broad nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001276 Hypertonia 
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 HP:0001376 Decreased mobility of joints 
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 HP:0001377 Limited elbow extension 
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 HP:0001522 Death in infancy 
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 HP:0001645 Sudden cardiac death 
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 HP:0001760 Abnormality of the feet "An abnormality of the feet (foot deformity) is a disorder of the foot that can either be congenital or acquired. Such deformities can include hammer toe, club foot deformity, flat feet, pes cavus, Congenital vertical talus (rocker bottom foot) & etc." [HPO:curators]
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 HP:0002047 Malignant hyperthermia "Malignant hyperthermia is characterized by a rapid increase in temperature to 39-42 degrees C in response to inhalational anesthetics such as halothane or to muscle relaxants such as succinylcholine." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002944 Thoracolumbar scoliosis 
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 HP:0002967 Cubitus valgus 
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0007141 Sensorimotor neuropathy 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009466 Radial deviation of fingers 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100729 Large face 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000113594 LIFR / P42702 / LIF receptor alpha  / complex / reaction
 ENSG00000006016 CRLF1 / O75462 / cytokine receptor like factor 1  / reaction / complex
 ENSG00000096968 JAK2 / O60674 / Janus kinase 2  / reaction / complex
 ENSG00000162434 JAK1 / P23458 / Janus kinase 1  / reaction / complex
 ENSG00000134352 IL6ST / P40189 / interleukin 6 signal transducer  / complex / reaction
 ENSG00000122756 CNTFR / P26992 / ciliary neurotrophic factor receptor  / complex / reaction






 

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