ENSG00000113594


Homo sapiens

Features
Gene ID: ENSG00000113594
  
Biological name :LIFR
  
Synonyms : LIFR / LIF receptor alpha / P42702
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: p13.1
Gene start: 38474963
Gene end: 38608354
  
Corresponding Affymetrix probe sets: 205876_at (Human Genome U133 Plus 2.0 Array)   225571_at (Human Genome U133 Plus 2.0 Array)   225575_at (Human Genome U133 Plus 2.0 Array)   227771_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000427310
Ensembl peptide - ENSP00000398368
Ensembl peptide - ENSP00000426685
Ensembl peptide - ENSP00000426919
Ensembl peptide - ENSP00000263409
NCBI entrez gene - 3977     See in Manteia.
OMIM - 151443
RefSeq - XM_017009463
RefSeq - NM_001127671
RefSeq - NM_002310
RefSeq - XM_011514040
RefSeq - XM_011514042
RefSeq - XM_017009462
RefSeq Peptide - NP_002301
RefSeq Peptide - NP_001121143
swissprot - D6RJ94
swissprot - H0YAF2
swissprot - P42702
swissprot - D6RF33
Ensembl - ENSG00000113594
  
Related genetic diseases (OMIM): 601559 - Stuve-Wiedemann syndrome/Schwartz-Jampel type 2 syndrome, 601559
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lifraENSDARG00000098857Danio rerio
 lifrbENSDARG00000039863Danio rerio
 LIFRENSGALG00000003733Gallus gallus
 LifrENSMUSG00000054263Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OSMR / Q99650 / oncostatin M receptorENSG0000014562326
Q99665 / IL12RB2 / interleukin 12 receptor subunit beta 2ENSG0000008198516
IL6ST / P40189 / interleukin 6 signal transducerENSG0000013435215
CSF3R / Q99062 / colony stimulating factor 3 receptorENSG0000011953513
IL31RA / Q8NI17 / interleukin 31 receptor AENSG0000016450912


Protein motifs (from Interpro)
Interpro ID Name
 IPR003529  Long hematopoietin receptor, Gp130 family 2, conserved site
 IPR003961  Fibronectin type III
 IPR013783  Immunoglobulin-like fold
 IPR036116  Fibronectin type III superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001959 regulation of cytokine-mediated signaling pathway TAS
 biological_processGO:0007166 cell surface receptor signaling pathway TAS
 biological_processGO:0008284 positive regulation of cell proliferation IDA
 biological_processGO:0019221 cytokine-mediated signaling pathway IDA
 biological_processGO:0034097 response to cytokine IDA
 biological_processGO:0038165 oncostatin-M-mediated signaling pathway IMP
 biological_processGO:0048861 leukemia inhibitory factor signaling pathway IDA
 biological_processGO:0070120 ciliary neurotrophic factor-mediated signaling pathway IDA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043235 receptor complex IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004896 cytokine receptor activity IEA
 molecular_functionGO:0004897 ciliary neurotrophic factor receptor activity IDA
 molecular_functionGO:0004923 leukemia inhibitory factor receptor activity TAS
 molecular_functionGO:0004924 oncostatin-M receptor activity IDA
 molecular_functionGO:0005127 ciliary neurotrophic factor receptor binding IPI
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0019838 growth factor binding IPI


Pathways (from Reactome)
Pathway description
IL-6-type cytokine receptor ligand interactions
RUNX1 regulates transcription of genes involved in interleukin signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000205 Pursed lips 
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 HP:0000211 Trismus "Limitation in the ability to open the mouth." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000321 Square face 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000504 Abnormality of vision "Abnormality of eyesight (visual perception)." [HPO:curators]
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 HP:0000632 Lacrimation abnormality 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000821 Hypothyroidism 
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 HP:0000883 Thin ribs 
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 HP:0000935 Thickened cortex of long bones "Abnormal thickening of the cortex of long bones." [HPO:curators]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0000960 Sacral dimple "A subtype of `skin dimples` (HP:0010781) presenting as an indentation in the skin of the intergluteal cleft ." [HPO:probinson]
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 HP:0000963 Thin skin 
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 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0001181 Adducted thumbs 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001562 Oligohydramnios 
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 HP:0001609 Hoarse voice 
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 HP:0001611 Nasal speech 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001883 Talipes 
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 HP:0001954 Fever, episodic "Periodic (episodic or recurrent) bouts of fever that do not have an infectious cause." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002098 Respiratory distress 
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 HP:0002099 Asthma "Asthma is characterized by increased responsiveness of the tracheobronchial tree to multiple stimuli, leading to narrowing of the air passages with resultant dyspnea, cough, and wheezing." [HPO:curators]
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002459 Dysautonomia 
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 HP:0002486 Myotonia "Myotonia is characterized by an abnormally slow relaxation of the muscles after voluntary contraction or electrical stimulation. During physical examination, myotonia may be elicited by asking the patient to make a tight fist and then quickly open the hand." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002857 Genu valgum 
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0002982 Tibial bowing "A developmental defect with posteromedial tibial angulation." [HPO:curators]
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 HP:0002983 Micromelia 
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 HP:0002987 Elbow contractures 
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 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
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 HP:0003016 Metaphyseal widening "Abnormal widening of the metaphyseal regions of long bones." [HPO:curators]
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 HP:0003037 Enlarged joints 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003401 Paresthesia "Abnormal sensations such as tingling, pricking, or numbness of the skin with no apparent physical cause." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004684 ankle valgus deformity 
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 HP:0004964 Arteries show medial hypertrophy 
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 HP:0004980 Rarefaction of the metaphyses 
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 HP:0005089 Abnormal metaphyseal trabeculation 
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 HP:0005736 Hypoplastic tibia 
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 HP:0005830 Partial flexion contractures of fingers and toes 
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 HP:0006380 Knee flexion deformities 
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 HP:0006844 Absent patellar reflexes 
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 HP:0007328 Decreased pain sensation "Reduced ability to perceive painful stimuli." [HPO:curators]
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 HP:0007610 Blotching pigmentation of the skin 
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0008000 Decreased corneal reflex 
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 HP:0008824 Hypoplastic iliac body 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009185 Contracture of the proximal interphalangeal joint of the 5th finger "Chronic loss of joint motion of the proximal interphalangeal joint of the 5th finger due to structural changes in non-bony tissue." [HPO:curators]
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 HP:0009465 Ulnar deviation of fingers 
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0010298 Smooth tongue "Glossy appearance of the entire tongue surface." [pmid:19125428]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012745 Short palpebral fissure "Distance between the medial and lateral canthi is more than 2 SD below the mean for age (objective); or, apparently reduced length of the palpebral fissures." [pmid:19125427]
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 HP:0012810 Wide nasal base "Increased distance between the attachments of the alae nasi to the face." [HPO:probinson, pmid:19152422]
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 HP:0100028 Ectopic thyroid "`Mislocalised` (PATO:0000628) `thyroid gland` (FMA:9603)." [HPO:sdoelken]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100865 Broad ischia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000128342 LIF / P15018 / LIF, interleukin 6 family cytokine  / complex / reaction
 ENSG00000099985 OSM / P13725 / oncostatin M  / reaction / complex
 ENSG00000150281 CTF1 / Q16619 / cardiotrophin 1  / reaction / complex
 ENSG00000175505 CLCF1 / Q9UBD9 / cardiotrophin like cytokine factor 1  / reaction / complex
 ENSG00000162434 JAK1 / P23458 / Janus kinase 1  / complex / reaction
 ENSG00000134352 IL6ST / P40189 / interleukin 6 signal transducer  / complex / reaction
 ENSG00000242689 CNTF / P26441 / ciliary neurotrophic factor  / reaction / complex
 ENSG00000122756 CNTFR / P26992 / ciliary neurotrophic factor receptor  / complex / reaction
 ENSG00000096968 JAK2 / O60674 / Janus kinase 2  / complex / reaction
 ENSG00000006016 CRLF1 / O75462 / cytokine receptor like factor 1  / complex / reaction






 

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