ENSG00000006016


Homo sapiens

Features
Gene ID: ENSG00000006016
  
Biological name :CRLF1
  
Synonyms : CRLF1 / cytokine receptor like factor 1 / O75462
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: p13.11
Gene start: 18572220
Gene end: 18607741
  
Corresponding Affymetrix probe sets: 206315_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000376188
Ensembl peptide - ENSP00000470625
NCBI entrez gene - 9244     See in Manteia.
OMIM - 604237
RefSeq - XM_011528424
RefSeq - NM_004750
RefSeq - XM_011528422
RefSeq - XM_011528423
RefSeq Peptide - NP_004741
swissprot - M0QZL6
swissprot - O75462
Ensembl - ENSG00000006016
  
Related genetic diseases (OMIM): 272430 - Cold-induced sweating syndrome 1, 272430
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 crlf1aENSDARG00000024365Danio rerio
 crlf1bENSDARG00000006368Danio rerio
 CRLF1ENSGALG00000026146Gallus gallus
 Crlf1ENSMUSG00000007888Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PRLR / P16471 / prolactin receptorENSG0000011349420
GHR / P10912 / growth hormone receptorENSG0000011296415


Protein motifs (from Interpro)
Interpro ID Name
 IPR003961  Fibronectin type III
 IPR013783  Immunoglobulin-like fold
 IPR015152  Growth hormone/erythropoietin receptor, ligand binding
 IPR036116  Fibronectin type III superfamily
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0008284 positive regulation of cell proliferation IDA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway TAS
 biological_processGO:0042531 positive regulation of tyrosine phosphorylation of STAT protein IDA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IDA
 biological_processGO:0070106 interleukin-27-mediated signaling pathway TAS
 biological_processGO:2000672 negative regulation of motor neuron apoptotic process IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0097058 CRLF-CLCF1 complex IDA
 molecular_functionGO:0005125 cytokine activity IDA
 molecular_functionGO:0005127 ciliary neurotrophic factor receptor binding IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0019955 cytokine binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity IDA


Pathways (from Reactome)
Pathway description
IL-6-type cytokine receptor ligand interactions
Interleukin-27 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000278 Retrognathia 
Show

 HP:0000293 Full cheeks 
Show

 HP:0000343 Long philtrum 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000445 Broad nose 
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000470 Short neck 
Show

 HP:0000670 Carious teeth 
Show

 HP:0000966 Hypohidrosis "Abnormally diminished capacity to sweat." [HPO:curators]
Show

 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
Show

 HP:0001181 Adducted thumbs 
Show

 HP:0001182 Tapered fingers 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001276 Hypertonia 
Show

 HP:0001376 Decreased mobility of joints 
Show

 HP:0001377 Limited elbow extension 
Show

 HP:0001522 Death in infancy 
Show

 HP:0001611 Nasal speech 
Show

 HP:0001645 Sudden cardiac death 
Show

 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
Show

 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
Show

 HP:0001954 Fever, episodic "Periodic (episodic or recurrent) bouts of fever that do not have an infectious cause." [HPO:curators]
Show

 HP:0002047 Malignant hyperthermia "Malignant hyperthermia is characterized by a rapid increase in temperature to 39-42 degrees C in response to inhalational anesthetics such as halothane or to muscle relaxants such as succinylcholine." [HPO:curators]
Show

 HP:0002093 Respiratory insufficiency 
Show

 HP:0002094 Dyspnea 
Show

 HP:0002179 Opisthotonus 
Show

 HP:0002571 Achalasia 
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002751 Kyphoscoliosis 
Show

 HP:0002808 Kyphosis 
Show

 HP:0002987 Elbow contractures 
Show

 HP:0004279 Hypoplastic hand 
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0009466 Radial deviation of fingers 
Show

 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
Show

 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
Show

 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
Show

 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

 HP:0100729 Large face 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000175505 CLCF1 / Q9UBD9 / cardiotrophin like cytokine factor 1  / reaction / complex
 ENSG00000162434 JAK1 / P23458 / Janus kinase 1  / reaction / complex
 ENSG00000134352 IL6ST / P40189 / interleukin 6 signal transducer  / complex / reaction
 ENSG00000197272 IL27 / Q8NEV9 / interleukin 27  / complex
 ENSG00000122756 CNTFR / P26992 / ciliary neurotrophic factor receptor  / complex / reaction
 ENSG00000096968 JAK2 / O60674 / Janus kinase 2  / complex / reaction
 ENSG00000113594 LIFR / P42702 / LIF receptor alpha  / reaction / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr