ENSG00000179163


Homo sapiens

Features
Gene ID: ENSG00000179163
  
Biological name :FUCA1
  
Synonyms : alpha-L-fucosidase 1 / FUCA1 / P04066
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p36.11
Gene start: 23845077
Gene end: 23868294
  
Corresponding Affymetrix probe sets: 202838_at (Human Genome U133 Plus 2.0 Array)   229137_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363603
NCBI entrez gene - 2517     See in Manteia.
OMIM - 612280
RefSeq - XM_017000905
RefSeq - NM_000147
RefSeq - XM_005245821
RefSeq - XM_011541167
RefSeq Peptide - NP_000138
swissprot - P04066
Ensembl - ENSG00000179163
  
Related genetic diseases (OMIM): 230000 - Fucosidosis, 230000
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fuca1.1ENSDARG00000035890Danio rerio
 fuca1.2ENSDARG00000035879Danio rerio
 FUCA1ENSGALG00000004112Gallus gallus
 Fuca1ENSMUSG00000028673Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FUCA2 / Q9BTY2 / alpha-L-fucosidase 2ENSG0000000103654


Protein motifs (from Interpro)
Interpro ID Name
 IPR000933  Glycoside hydrolase, family 29
 IPR016286  Alpha-L-fucosidase, metazoa-type
 IPR017853  Glycoside hydrolase superfamily
 IPR018526  Glycoside hydrolase, family 29, conserved site
 IPR028755  Tissue alpha-L-fucosidase
 IPR031919  Alpha-L-fucosidase, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0006004 fucose metabolic process IDA
 biological_processGO:0006027 glycosaminoglycan catabolic process NAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0016139 glycoside catabolic process IDA
 biological_processGO:0019377 glycolipid catabolic process ISS
 biological_processGO:0043312 neutrophil degranulation TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0035578 azurophil granule lumen TAS
 cellular_componentGO:0043202 lysosomal lumen TAS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0004560 alpha-L-fucosidase activity TAS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016798 hydrolase activity, acting on glycosyl bonds IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation
Reactions specific to the complex N-glycan synthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000316 Hypertelorism 
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 HP:0000365 Hearing loss 
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 HP:0000445 Broad nose 
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 HP:0000503 Tortuosity of conjunctival vessels 
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 HP:0000574 Thick eyebrows 
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 HP:0000821 Hypothyroidism 
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 HP:0000914 Shield chest 
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 HP:0000943 Dysostosis multiplex 
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 HP:0000958 Dry skin 
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 HP:0000970 Anhidrosis "Inability to sweat." [HPO:curators]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0001014 Angiokeratoma 
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 HP:0001063 Acrocyanosis 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001508 Failure to thrive 
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 HP:0001552 Barrel-shaped chest 
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 HP:0001597 Abnormality of the nails "Abnormality of the fingernails or toenails." [HPO:curators]
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 HP:0001640 Cardiomegaly 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001922 Vacuolated lymphocytes 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0003199 Decreased muscle mass 
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 HP:0004298 Abnormality of the abdominal wall "The presence of any abnormality affecting the abdominal wall." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004558 cervical platyspondyly 
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 HP:0004630 anterior beaking of thoracic and lumbar vertebrae 
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 HP:0005264 Abnormality of the gallbladder 
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 HP:0005453 Absent/hypoplastic paranasal sinuses 
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 HP:0005595 Hyperkeratosis, generalized 
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 HP:0007256 Mild pyramidal signs 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0008155 Acid mucopolysacchariduria 
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 HP:0008430 Mild anterior beaking of lumbar vertebrae 
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 HP:0008436 Absent/hypoplastic coccyx 
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 HP:0010471 Oligosacchariduria "Increased urinary excretion of oligosaccharides (low molecular weight carbohydrate chains composed of at least three monosaccharide subunits), derived from a partial degradation of glycoproteins." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011276 Vascular skin abnormality 
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 HP:0012236 Elevated sweat chloride "An increased concentration of chloride in the sweat." [HPO:probinson]
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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 HP:0100790 Hernia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000179163 FUCA1 / P04066 / alpha-L-fucosidase 1  / complex






 

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