ENSG00000179542


Homo sapiens

Features
Gene ID: ENSG00000179542
  
Biological name :SLITRK4
  
Synonyms : Q8IW52 / SLIT and NTRK like family member 4 / SLITRK4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q27.3
Gene start: 143622790
Gene end: 143635777
  
Corresponding Affymetrix probe sets: 230680_at (Human Genome U133 Plus 2.0 Array)   232636_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000336627
Ensembl peptide - ENSP00000349400
Ensembl peptide - ENSP00000469205
NCBI entrez gene - 139065     See in Manteia.
OMIM - 300562
RefSeq - XM_011531265
RefSeq - NM_001184749
RefSeq - NM_001184750
RefSeq - NM_173078
RefSeq - XM_005262365
RefSeq Peptide - NP_775101
RefSeq Peptide - NP_001171678
RefSeq Peptide - NP_001171679
swissprot - Q8IW52
Ensembl - ENSG00000179542
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slitrk4ENSDARG00000079781Danio rerio
 SLITRK4ENSGALG00000007242Gallus gallus
 Q810B8ENSMUSG00000046699Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O94991 / SLITRK5 / SLIT and NTRK like family member 5ENSG0000016530045
O96002 / Q9H156 / SLITRK2 / SLIT and NTRK like family member 2ENSG0000018598544
O94933 / SLITRK3 / SLIT and NTRK like family member 3ENSG0000012187142
Q9H5Y7 / SLITRK6 / SLIT and NTRK like family member 6ENSG0000018456441
Q96PX8 / SLITRK1 / SLIT and NTRK like family member 1ENSG0000017823534
ELFN2 / Q5R3F8 / extracellular leucine rich repeat and fibronectin type III domain containing 2ENSG0000016689715
ELFN1 / P0C7U0 / extracellular leucine rich repeat and fibronectin type III domain containing 1ENSG0000022596813
LRRC19 / Q9H756 / leucine rich repeat containing 19ENSG0000018443410


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0051965 positive regulation of synapse assembly IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Receptor-type tyrosine-protein phosphatases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr