ENSG00000180228


Homo sapiens

Features
Gene ID: ENSG00000180228
  
Biological name :PRKRA
  
Synonyms : O75569 / PRKRA / protein activator of interferon induced protein kinase EIF2AK2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q31.2
Gene start: 178431414
Gene end: 178451512
  
Corresponding Affymetrix probe sets: 209139_s_at (Human Genome U133 Plus 2.0 Array)   237107_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000408668
Ensembl peptide - ENSP00000408029
Ensembl peptide - ENSP00000430604
Ensembl peptide - ENSP00000318176
Ensembl peptide - ENSP00000388455
Ensembl peptide - ENSP00000393883
NCBI entrez gene - 8575     See in Manteia.
OMIM - 603424
RefSeq - XM_017005159
RefSeq - NM_001139517
RefSeq - NM_001139518
RefSeq - NM_001316362
RefSeq - NM_003690
RefSeq - XM_011512063
RefSeq - XM_011512066
RefSeq Peptide - NP_001132989
RefSeq Peptide - NP_001132990
RefSeq Peptide - NP_001303291
RefSeq Peptide - NP_003681
swissprot - O75569
swissprot - C9JMM3
swissprot - F8WEG8
swissprot - G5E9Q4
Ensembl - ENSG00000180228
  
Related genetic diseases (OMIM): 612067 - Dystonia 16, 612067
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prkraENSDARG00000076718Danio rerio
 PrkraENSMUSG00000002731Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q15633 / TARBP2 / TARBP2, RISC loading complex RNA binding subunitENSG0000013954647


Protein motifs (from Interpro)
Interpro ID Name
 IPR014720  Double-stranded RNA-binding domain
 IPR032478  Staufen, C-terminal
 IPR033363  Interferon-inducible double-stranded RNA-dependent protein kinase activator A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0006955 immune response TAS
 biological_processGO:0008285 negative regulation of cell proliferation TAS
 biological_processGO:0009615 response to virus TAS
 biological_processGO:0010586 miRNA metabolic process TAS
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0030422 production of siRNA involved in RNA interference IEA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0031054 pre-miRNA processing IDA
 biological_processGO:0034599 cellular response to oxidative stress IEA
 biological_processGO:0035196 production of miRNAs involved in gene silencing by miRNA IDA
 biological_processGO:0042473 outer ear morphogenesis IEA
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0043085 positive regulation of catalytic activity IEA
 biological_processGO:0043583 ear development IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0050821 protein stabilization IMP
 biological_processGO:2001244 positive regulation of intrinsic apoptotic signaling pathway IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0070578 RISC-loading complex IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008047 enzyme activator activity IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0070883 pre-miRNA binding IDA


Pathways (from Reactome)
Pathway description
MicroRNA (miRNA) biogenesis
Small interfering RNA (siRNA) biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000750 Impaired language development 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001300 Parkinsonism 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001618 Dysphonia 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002062 Abnormality of the pyramidal tracts "An abnormality of the pyramidal system of motor neurons, whose chief element, the corticospinal tract, is the only direct connection between the brain and the spinal cord. In addition to the corticospinal tract, the pyramidal system includes the corticobulbar, corticomesencephalic, and corticopontine tracts." [HPO:curators]
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
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 HP:0002174 Postural tremor "A type of tremors that is triggered by holding a limb in a fixed position." [HPO:curators]
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 HP:0002451 Limb dystonia 
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 HP:0002544 Retrocollis 
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 HP:0003676 Progressive disorder 
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 HP:0004305 Involuntary muscle contractions 
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 HP:0007256 Mild pyramidal signs 
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 HP:0009763 Limb pain "Chronic pain in the limbs with no clear focal etiology." [HPO:curators]
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 HP:0012049 Laryngeal dystonia "A form of focal dystonia that affects the vocal cords, associated with involuntary contractions of the vocal cords causing interruptions of speech and affecting the voice quality and often leading to patterned, repeated breaks in speech." [HPO:probinson]
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 HP:0012514 Lower limb pain "Pain in the leg with no clear focal etiology." [ORCID:0000-0001-5208-3432]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000123908 AGO2 / Q9UKV8 / argonaute 2, RISC catalytic component  / complex
 ENSG00000100697 DICER1 / Q9UPY3 / dicer 1, ribonuclease III  / complex






 

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contact: otassy@igbmc.fr