ENSG00000187147


Homo sapiens

Features
Gene ID: ENSG00000187147
  
Biological name :RNF220
  
Synonyms : Q5VTB9 / ring finger protein 220 / RNF220
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p34.1
Gene start: 44405194
Gene end: 44651724
  
Corresponding Affymetrix probe sets: 219988_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000475383
Ensembl peptide - ENSP00000388533
Ensembl peptide - ENSP00000411541
Ensembl peptide - ENSP00000335580
Ensembl peptide - ENSP00000347548
Ensembl peptide - ENSP00000354872
Ensembl peptide - ENSP00000361321
NCBI entrez gene - 55182     See in Manteia.
OMIM - 616136
RefSeq - XM_017001626
RefSeq - NM_001319956
RefSeq - NM_001319957
RefSeq - NM_018150
RefSeq - XM_005270996
RefSeq - XM_011541698
RefSeq - XM_011541699
RefSeq - XM_011541700
RefSeq - XM_011541702
RefSeq - XM_017001623
RefSeq - XM_017001624
RefSeq - XM_017001625
RefSeq - XM_005270992
RefSeq - XM_005270993
RefSeq Peptide - NP_001306885
RefSeq Peptide - NP_001306886
RefSeq Peptide - NP_060620
swissprot - Q5TDE7
swissprot - Q5TDE8
swissprot - Q5VTB9
swissprot - U3KPZ6
swissprot - H0Y7B1
Ensembl - ENSG00000187147
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf220aENSDARG00000060929Danio rerio
 rnf220bENSDARG00000075183Danio rerio
 RNF220ENSGALG00000010109Gallus gallus
 Q6PDX6ENSMUSG00000028677Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR031824  E3 ubiquitin-protein ligase RNF220, middle domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination ISS
 biological_processGO:0051865 protein autoubiquitination ISS
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IMP
 cellular_componentGO:0005737 cytoplasm ISS
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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