ENSGALG00000010109


Gallus gallus

Features
Gene ID: ENSGALG00000010109
  
Biological name :RNF220
  
Synonyms : ring finger protein 220 / RNF220
  
Possible biological names infered from orthology : Q5VTB9 / Q6PDX6
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 20642069
Gene end: 20799404
  
Corresponding Affymetrix probe sets: Gga.14316.1.S1_at (Chicken Array)   Gga.9633.1.S1_at (Chicken Array)   GgaAffx.20335.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000032530
Ensembl peptide - ENSGALP00000032528
NCBI entrez gene - 424580     See in Manteia.
RefSeq - XM_015291001
RefSeq - NM_001012599
RefSeq - NM_001109987
RefSeq - XM_015290998
RefSeq - XM_015290999
RefSeq - XM_015291000
RefSeq Peptide - NP_001012617
RefSeq Peptide - NP_001103457
swissprot - E1C3K9
swissprot - Q5F338
Ensembl - ENSGALG00000010109
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf220aENSDARG00000060929Danio rerio
 rnf220bENSDARG00000075183Danio rerio
 Q5VTB9ENSG00000187147Homo sapiens
 Q6PDX6ENSMUSG00000028677Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR031824  E3 ubiquitin-protein ligase RNF220, middle domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0051865 protein autoubiquitination IEA
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr