ENSMUSG00000028677


Mus musculus

Features
Gene ID: ENSMUSG00000028677
  
Biological name :Rnf220
  
Synonyms : Q6PDX6 / ring finger protein 220 / Rnf220
  
Possible biological names infered from orthology : Q5VTB9
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: D1
Gene start: 117271463
Gene end: 117497052
  
Corresponding Affymetrix probe sets: 10515461 (MoGene1.0st)   10338128 (MoGene1.0st)   10338396 (MoGene1.0st)   10338662 (MoGene1.0st)   10338837 (MoGene1.0st)   10338865 (MoGene1.0st)   10339529 (MoGene1.0st)   10340093 (MoGene1.0st)   10340369 (MoGene1.0st)   10341040 (MoGene1.0st)   10341793 (MoGene1.0st)   10342006 (MoGene1.0st)   10342201 (MoGene1.0st)   10342660 (MoGene1.0st)   10343544 (MoGene1.0st)   10343555 (MoGene1.0st)   10343621 (MoGene1.0st)   10343745 (MoGene1.0st)   10344071 (MoGene1.0st)   10339212 (MoGene1.0st)   10339250 (MoGene1.0st)   10339358 (MoGene1.0st)   10339671 (MoGene1.0st)   10339811 (MoGene1.0st)   10342059 (MoGene1.0st)   10342138 (MoGene1.0st)   10342435 (MoGene1.0st)   10343031 (MoGene1.0st)   10344294 (MoGene1.0st)   1415717_at (Mouse Genome 430 2.0 Array)   1440297_at (Mouse Genome 430 2.0 Array)   1443791_at (Mouse Genome 430 2.0 Array)   1453773_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000092449
Ensembl peptide - ENSMUSP00000152367
Ensembl peptide - ENSMUSP00000152638
Ensembl peptide - ENSMUSP00000030439
Ensembl peptide - ENSMUSP00000099751
NCBI entrez gene - 66743     See in Manteia.
MGI - MGI:1913993
RefSeq - XM_017320357
RefSeq - NM_001310729
RefSeq - NM_001310730
RefSeq - NM_001310731
RefSeq - NM_025739
RefSeq - XM_006503285
RefSeq - XM_011240587
RefSeq - XM_011240588
RefSeq - XM_011240589
RefSeq - XM_017320354
RefSeq - XM_017320355
RefSeq - XM_017320356
RefSeq Peptide - NP_001297658
RefSeq Peptide - NP_001297659
RefSeq Peptide - NP_001297660
RefSeq Peptide - NP_080015
swissprot - Q6PDX6
swissprot - Q9D4L6
swissprot - A0A1Y7VMC0
Ensembl - ENSMUSG00000028677
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf220aENSDARG00000060929Danio rerio
 rnf220bENSDARG00000075183Danio rerio
 RNF220ENSGALG00000010109Gallus gallus
 Q5VTB9ENSG00000187147Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR031824  E3 ubiquitin-protein ligase RNF220, middle domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0051865 protein autoubiquitination IDA
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway ISS
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IDA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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