ENSG00000187553


Homo sapiens

Features
Gene ID: ENSG00000187553
  
Biological name :CYP26C1
  
Synonyms : CYP26C1 / cytochrome P450 family 26 subfamily C member 1 / Q6V0L0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q23.33
Gene start: 93060808
Gene end: 93069536
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSP00000285949
Ensembl peptide - ENSP00000485098
NCBI entrez gene - 340665     See in Manteia.
OMIM - 608428
RefSeq - NM_183374
RefSeq Peptide - NP_899230
swissprot - A0A096LNL5
swissprot - Q6V0L0
Ensembl - ENSG00000187553
  
Related genetic diseases (OMIM): 614974 - Focal facial dermal dysplasia 4, 614974
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cyp26c1ENSDARG00000056029Danio rerio
 CYP26C1ENSGALG00000043213Gallus gallus
 Cyp26c1ENSMUSG00000062432Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9NR63 / CYP26B1 / cytochrome P450 family 26 subfamily B member 1ENSG0000000313751
O43174 / CYP26A1 / cytochrome P450 family 26 subfamily A member 1ENSG0000009559643
Q16850 / CYP51A1 / cytochrome P450 family 51 subfamily A member 1ENSG0000000163020


Protein motifs (from Interpro)
Interpro ID Name
 IPR001128  Cytochrome P450
 IPR002403  Cytochrome P450, E-class, group IV
 IPR017972  Cytochrome P450, conserved site
 IPR036396  Cytochrome P450 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006766 vitamin metabolic process TAS
 biological_processGO:0007417 central nervous system development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0014032 neural crest cell development IEA
 biological_processGO:0016125 sterol metabolic process IBA
 biological_processGO:0034653 retinoic acid catabolic process IDA
 biological_processGO:0048284 organelle fusion IEA
 biological_processGO:0048387 negative regulation of retinoic acid receptor signaling pathway NAS
 biological_processGO:0055114 oxidation-reduction process IDA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0001972 retinoic acid binding IDA
 molecular_functionGO:0004497 monooxygenase activity IEA
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0008401 retinoic acid 4-hydroxylase activity TAS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
 molecular_functionGO:0020037 heme binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Vitamins
RA biosynthesis pathway
Defective CYP26C1 causes Focal facial dermal dysplasia 4 (FFDD4)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000238 Hydrocephalus 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000331 Small chin 
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 HP:0001028 Hemangiomas "The presence of multiple hemangiomas. A hemangioma is a benign tumor characterized by blood-filled spaces lined by benign endothelial cells. A hemangioma characterized by large endothelial spaces (caverns) is called a cavernous hemangioma (in contrast to a hemangioma with small endothelial spaces, which is called capillary hemangioma)." [HPO:curators]
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 HP:0001269 Hemiparesis "Relatively mild weakness in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0002170 Intracranial hemorrhage "A hemorrhage (bleeding) occuring within the skull." [HPO:curators]
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 HP:0003764 Abnormal or excess nevi 
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 HP:0007359 Partial seizures "Recurrent partial `seizures` (HP:0001250). In a partial seizure, the electrical disturbance is limited to one part or side of the brain. That is, partial epilepsies are epileptic disorders in which clinical or laboratory findings disclose a localized origin of seizures." [HPO:curators]
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0011124 Abnormality of epidermal morphology "An abnormality of the morphology of the `epidermis` (FMA:70596)." [HPO:probinson]
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 HP:0025167 Fragmented elastic fibers in the dermis "Elastic fibers in the dermis exhibit an increased number of breaks associated with disorganization of the structure of the elastic fibers." []
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 HP:0100494 Abnormality of mast cells "An abnormality of `mast cells` (CL:0000097)." [HPO:sdoelken]
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 HP:0100699 Scarring 
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 HP:3000019 Abnormality of buccal mucosa "An abnormality of a buccal mucosa." [GOC:TermGenie]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166426 CRABP1 / P29762 / cellular retinoic acid binding protein 1  / reaction






 

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