ENSG00000197106


Homo sapiens

Features
Gene ID: ENSG00000197106
  
Biological name :SLC6A17
  
Synonyms : Q9H1V8 / SLC6A17 / solute carrier family 6 member 17
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p13.3
Gene start: 110150486
Gene end: 110202202
  
Corresponding Affymetrix probe sets: 229925_at (Human Genome U133 Plus 2.0 Array)   233287_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000330199
NCBI entrez gene - 388662     See in Manteia.
OMIM - 610299
RefSeq - NM_001010898
RefSeq - XM_006710643
RefSeq Peptide - NP_001010898
swissprot - Q9H1V8
Ensembl - ENSG00000197106
  
Related genetic diseases (OMIM): 616269 - Mental retardation, autosomal recessive 48, 616269
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc6a17ENSDARG00000068787Danio rerio
 SLC6A17ENSGALG00000000394Gallus gallus
 Q8BJI1ENSMUSG00000027894Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H2J7 / SLC6A15 / solute carrier family 6 member 15ENSG0000007204166
Q695T7 / SLC6A19 / solute carrier family 6 member 19ENSG0000017435836
Q9NP91 / SLC6A20 / solute carrier family 6 member 20ENSG0000016381735
Q96N87 / SLC6A18 / solute carrier family 6 member 18ENSG0000016436334
Q9GZN6 / SLC6A16 / solute carrier family 6 member 16ENSG0000006312731


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR002438  Sodium:neurotransmitter symporter, orphan
 IPR037272  Sodium:neurotransmitter symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003333 amino acid transmembrane transport IEA
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0015804 neutral amino acid transport IEA
 biological_processGO:0015816 glycine transport IEA
 biological_processGO:0015820 leucine transport IEA
 biological_processGO:0015824 proline transport IEA
 biological_processGO:0032328 alanine transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0008021 synaptic vesicle IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030672 synaptic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0015171 amino acid transmembrane transporter activity IBA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000400 Large ears 
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000742 Self-mutilation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0002515 Waddling gait 
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 HP:0002540 Inability to walk 
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0030186 Kinetic tremor "Tremor that occurs during any voluntary movement. It may include visually or non-visually guided movements. Tremor during target directed movement is called intention tremor." []
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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