ENSMUSG00000027894


Mus musculus

Features
Gene ID: ENSMUSG00000027894
  
Biological name :Slc6a17
  
Synonyms : Q8BJI1 / Slc6a17 / Sodium-dependent neutral amino acid transporter SLC6A17
  
Possible biological names infered from orthology : Q9H1V8 / solute carrier family 6 member 17
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: F2.3
Gene start: 107467543
Gene end: 107518018
  
Corresponding Affymetrix probe sets: 10501104 (MoGene1.0st)   1436137_at (Mouse Genome 430 2.0 Array)   1458394_at (Mouse Genome 430 2.0 Array)   1458441_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000129379
Ensembl peptide - ENSMUSP00000131888
Ensembl peptide - ENSMUSP00000129588
Ensembl peptide - ENSMUSP00000029499
NCBI entrez gene - 229706     See in Manteia.
MGI - MGI:2442535
RefSeq - NM_172271
RefSeq - XM_006501407
RefSeq - XM_006501406
RefSeq - NM_001293689
RefSeq Peptide - NP_001280618
RefSeq Peptide - NP_758475
swissprot - A0A0R4J252
swissprot - Q8BJI1
swissprot - A0A0R4J087
swissprot - E9Q4S9
Ensembl - ENSMUSG00000027894
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc6a17ENSDARG00000068787Danio rerio
 SLC6A17ENSGALG00000000394Gallus gallus
 Q9H1V8ENSG00000197106Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BG16 / Slc6a15 / Sodium-dependent neutral amino acid transporter B(0)AT2 / Q9H2J7* / solute carrier family 6 member 15*ENSMUSG0000001989466
Q9D687 / Slc6a19 / solute carrier family 6 (neurotransmitter transporter), member 19 / Q695T7* / solute carrier family 6 member 19*ENSMUSG0000002156536
O88576 / Slc6a18 / solute carrier family 6 (neurotransmitter transporter), member 18 / Q96N87* / solute carrier family 6 member 18*ENSMUSG0000002161235
Q8VDB9 / Slc6a20a / Sodium- and chloride-dependent transporter XTRP3A ENSMUSG0000003681435
O88575 / Slc6a20b / Sodium- and chloride-dependent transporter XTRP3B / Q9NP91* / SLC6A20* / solute carrier family 6 member 20*ENSMUSG0000002524334
Slc6a16 / Q9GZN6* / solute carrier family 6 member 16*ENSMUSG0000009415227
Slc6a21ENSMUSG0000007056813


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR002438  Sodium:neurotransmitter symporter, orphan
 IPR037272  Sodium:neurotransmitter symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003333 amino acid transmembrane transport IEA
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0007420 brain development IDA
 biological_processGO:0015804 neutral amino acid transport IEA
 biological_processGO:0015816 glycine transport IEA
 biological_processGO:0015820 leucine transport IEA
 biological_processGO:0015824 proline transport IEA
 biological_processGO:0032328 alanine transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0008021 synaptic vesicle IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030672 synaptic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0015171 amino acid transmembrane transporter activity IBA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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