ENSMUSG00000025243


Mus musculus

Features
Gene ID: ENSMUSG00000025243
  
Biological name :Slc6a20b
  
Synonyms : O88575 / Slc6a20b / Sodium- and chloride-dependent transporter XTRP3B
  
Possible biological names infered from orthology : Q9NP91 / SLC6A20 / solute carrier family 6 member 20
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: F4
Gene start: 123590800
Gene end: 123632565
  
Corresponding Affymetrix probe sets: 10597949 (MoGene1.0st)   1422899_at (Mouse Genome 430 2.0 Array)   1436667_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000127422
Ensembl peptide - ENSMUSP00000129307
Ensembl peptide - ENSMUSP00000150479
Ensembl peptide - ENSMUSP00000026273
NCBI entrez gene - 22599     See in Manteia.
MGI - MGI:1336891
RefSeq - NM_011731
RefSeq Peptide - NP_035861
swissprot - O88575
swissprot - A0A1L1STV0
swissprot - F6TTF6
swissprot - F7AVF9
Ensembl - ENSMUSG00000025243
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC6A20ENSGALG00000039333Gallus gallus
 Q9NP91ENSG00000163817Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8VDB9 / Slc6a20a / Sodium- and chloride-dependent transporter XTRP3A ENSMUSG0000003681484
Q9D687 / Slc6a19 / solute carrier family 6 (neurotransmitter transporter), member 19 / Q695T7* / solute carrier family 6 member 19*ENSMUSG0000002156544
O88576 / Slc6a18 / solute carrier family 6 (neurotransmitter transporter), member 18 / Q96N87* / solute carrier family 6 member 18*ENSMUSG0000002161243
Q8BG16 / Slc6a15 / Sodium-dependent neutral amino acid transporter B(0)AT2 / Q9H2J7* / solute carrier family 6 member 15*ENSMUSG0000001989439
Q8BJI1 / Slc6a17 / Sodium-dependent neutral amino acid transporter SLC6A17 / Q9H1V8* / solute carrier family 6 member 17*ENSMUSG0000002789439
Slc6a16 / Q9GZN6* / solute carrier family 6 member 16*ENSMUSG0000009415227
Slc6a21ENSMUSG0000007056811


Protein motifs (from Interpro)
Interpro ID Name
 IPR000175  Sodium:neurotransmitter symporter
 IPR002438  Sodium:neurotransmitter symporter, orphan
 IPR037272  Sodium:neurotransmitter symporter superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0006865 amino acid transport IEA
 biological_processGO:0015816 glycine transport IEA
 biological_processGO:0015824 proline transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0031526 brush border membrane IDA
 molecular_functionGO:0005215 transporter activity TAS
 molecular_functionGO:0005328 neurotransmitter:sodium symporter activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015171 amino acid transmembrane transporter activity IEA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
Amino acid transport across the plasma membrane
Na+/Cl- dependent neurotransmitter transporters


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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