ENSG00000198689


Homo sapiens

Features
Gene ID: ENSG00000198689
  
Biological name :SLC9A6
  
Synonyms : Q92581 / SLC9A6 / solute carrier family 9 member A6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q26.3
Gene start: 135973841
Gene end: 136047269
  
Corresponding Affymetrix probe sets: 203909_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489827
Ensembl peptide - ENSP00000490752
Ensembl peptide - ENSP00000490731
Ensembl peptide - ENSP00000490648
Ensembl peptide - ENSP00000490527
Ensembl peptide - ENSP00000490406
Ensembl peptide - ENSP00000490330
Ensembl peptide - ENSP00000359729
Ensembl peptide - ENSP00000359732
Ensembl peptide - ENSP00000359735
Ensembl peptide - ENSP00000486743
Ensembl peptide - ENSP00000487486
NCBI entrez gene - 10479     See in Manteia.
OMIM - 300231
RefSeq - XM_017029225
RefSeq - XM_017029224
RefSeq - XM_017029223
RefSeq - XM_011531243
RefSeq - NM_001042537
RefSeq - NM_001177651
RefSeq - NM_001330652
RefSeq - XM_006724726
RefSeq - NM_006359
RefSeq Peptide - NP_001036002
RefSeq Peptide - NP_001171122
RefSeq Peptide - NP_001317581
RefSeq Peptide - NP_006350
swissprot - Q92581
swissprot - A0A1B0GW29
swissprot - A0A0D9SFM4
swissprot - A0A0D9SGH0
swissprot - A0A1B0GTT2
swissprot - A0A1B0GV11
Ensembl - ENSG00000198689
  
Related genetic diseases (OMIM): 300243 - Mental retardation, X-linked syndromic, Christianson type, 300243
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc9a6aENSDARG00000009209Danio rerio
 slc9a6bENSDARG00000075382Danio rerio
 SLC9A6ENSGALG00000006180Gallus gallus
 Slc9a6ENSMUSG00000060681Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q96T83 / SLC9A7 / solute carrier family 9 member A7ENSG0000006592369
Q8IVB4 / SLC9A9 / solute carrier family 9 member A9ENSG0000018180456
Q9Y2E8 / SLC9A8 / solute carrier family 9 member A8ENSG0000019781826
Q9UBY0 / SLC9A2 / solute carrier family 9 member A2ENSG0000011561624
Q14940 / SLC9A5 / solute carrier family 9 member A5ENSG0000013574022
Q6AI14 / SLC9A4 / solute carrier family 9 member A4ENSG0000018025122
P19634 / SLC9A1 / solute carrier family 9 member A1ENSG0000009002022
P48764 / SLC9A3 / solute carrier family 9 member A3ENSG0000006623021


Protein motifs (from Interpro)
Interpro ID Name
 IPR002090  Na+/H+ exchanger, isoform 6 (NHE6)
 IPR004709  Na+/H+ exchanger
 IPR006153  Cation/H+ exchanger
 IPR018422  Cation/H+ exchanger, CPA1 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport TAS
 biological_processGO:0006812 cation transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0006885 regulation of pH IEA
 biological_processGO:0031547 brain-derived neurotrophic factor receptor signaling pathway IEA
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0048675 axon extension IDA
 biological_processGO:0048812 neuron projection morphogenesis IDA
 biological_processGO:0050808 synapse organization IEA
 biological_processGO:0051386 regulation of neurotrophin TRK receptor signaling pathway IEA
 biological_processGO:0051453 regulation of intracellular pH IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060996 dendritic spine development IEA
 biological_processGO:0071805 potassium ion transmembrane transport IBA
 biological_processGO:0097484 dendrite extension IDA
 biological_processGO:0098719 sodium ion import across plasma membrane IBA
 biological_processGO:1902600 proton transmembrane transport IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031901 early endosome membrane TAS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0043679 axon terminus IEA
 cellular_componentGO:0044308 axonal spine IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0055037 recycling endosome IEA
 cellular_componentGO:0055038 recycling endosome membrane IDA
 molecular_functionGO:0015297 antiporter activity IEA
 molecular_functionGO:0015299 solute:proton antiporter activity IEA
 molecular_functionGO:0015385 sodium:proton antiporter activity IBA
 molecular_functionGO:0015386 potassium:proton antiporter activity IBA


Pathways (from Reactome)
Pathway description
Sodium/Proton exchangers
Defective SLC9A6 causes X-linked, syndromic mental retardation,, Christianson type (MRXSCH)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
Show

 HP:0000194 Open mouth 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000275 Narrow face 
Show

 HP:0000276 Long face 
Show

 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
Show

 HP:0000366 Abnormality of the nose 
Show

 HP:0000400 Large ears 
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000490 Deep set eyes 
Show

 HP:0000574 Thick eyebrows 
Show

 HP:0000602 Ophthalmoplegia 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000717 Autism 
Show

 HP:0000733 Stereotyped, repetitive behaviour 
Show

 HP:0000748 Inappropriate laughter 
Show

 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
Show

 HP:0000774 Narrow chest 
Show

 HP:0001181 Adducted thumbs 
Show

 HP:0001238 Slender fingers "Digits are disproportionaly narrow (reduced girth)." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001272 Cerebellar atrophy 
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
Show

 HP:0001344 Absent speech development 
Show

 HP:0001371 Contractures 
Show

 HP:0001423 X-linked dominant inheritance "A mode of inheritance that is observed for dominant traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked dominant disorders tend to manifest very severely in affected males. The severity of manifestation in females may depend on the degree of skewed X inactivation." [HPO:curators]
Show

 HP:0001760 Abnormality of the feet "An abnormality of the feet (foot deformity) is a disorder of the foot that can either be congenital or acquired. Such deformities can include hammer toe, club foot deformity, flat feet, pes cavus, Congenital vertical talus (rocker bottom foot) & etc." [HPO:curators]
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002020 Gastroesophageal reflux 
Show

 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
Show

 HP:0002078 Truncal ataxia 
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002120 Cerebral cortical atrophy 
Show

 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
Show

 HP:0002197 Generalized seizures "Recurrent generalized `seizures` (HP:0001250), that is seizures that affect both cerebral hemispheres from the start of the seizure, producing loss of consciousness." [HPO:probinson]
Show

 HP:0002300 Mutism 
Show

 HP:0002307 Drooling 
Show

 HP:0002360 Sleep disturbances "An abnormality of sleep including such phenomena as 1) insomnia/hypersomnia, 2) non-restorative sleep, 3) sleep schedule disorder, 4) excessive daytime somnolence, 5) sleep apnea, and 6) restlessness." [HPO:curators]
Show

 HP:0002376 Developmental regression 
Show

 HP:0002487 Hyperkinesis 
Show

 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
Show

 HP:0002607 Bowel incontinence 
Show

 HP:0002804 Arthrogryposis multiplex congenita 
Show

 HP:0003189 Long nose 
Show

 HP:0003199 Decreased muscle mass 
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0004325 Decreased body weight 
Show

 HP:0004326 Cachexia 
Show

 HP:0005692 Joint hyperflexibility 
Show

 HP:0006794 Loss of ability to walk in first decade 
Show

 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
Show

 HP:0007207 Seizures, tonic-clonic, photosensitive 
Show

 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
Show

 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
Show

 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
Show

 HP:0040082 Happy demeanor 
Show

 HP:0100024 Conspicuously happy disposition "An unusually happy aspect over time which can also may be observed during inappropriate situations that should be causing for example distress, fear or anger." [HPO:sdoelken]
Show

 HP:0100613 Death in early adulthood 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr