ENSG00000204574


Homo sapiens

Features
Gene ID: ENSG00000204574
  
Biological name :ABCF1
  
Synonyms : ABCF1 / ATP binding cassette subfamily F member 1 / Q8NE71
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p21.33
Gene start: 30571376
Gene end: 30597179
  
Corresponding Affymetrix probe sets: 200045_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000365728
Ensembl peptide - ENSP00000313603
Ensembl peptide - ENSP00000405512
Ensembl peptide - ENSP00000440893
Ensembl peptide - ENSP00000445100
NCBI entrez gene - 23     See in Manteia.
OMIM - 603429
RefSeq - NM_001025091
RefSeq - NM_001090
RefSeq Peptide - NP_001020262
RefSeq Peptide - NP_001081
swissprot - Q8NE71
swissprot - A0A1U9X609
swissprot - F5GYK6
swissprot - H0YGW7
swissprot - Q2L6I2
swissprot - Q5STZ8
Ensembl - ENSG00000204574
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abcf1ENSDARG00000031795Danio rerio
 Abcf1ENSMUSG00000038762Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABCF3 / Q9NUQ8 / ATP binding cassette subfamily F member 3ENSG0000016120432


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032781  ABC-transporter extension domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation TAS
 biological_processGO:0006954 inflammatory response TAS
 biological_processGO:0055085 transmembrane transport TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0016020 membrane HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008135 translation factor activity, RNA binding TAS
 molecular_functionGO:0016887 ATPase activity IEA


Pathways (from Reactome)
Pathway description
ABC-family proteins mediated transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000130741 EIF2S3 / P41091 / eukaryotic translation initiation factor 2 subunit gamma  / reaction / complex
 ENSG00000134001 EIF2S1 / P05198 / eukaryotic translation initiation factor 2 subunit alpha  / complex / reaction
 ENSG00000125977 EIF2S2 / P20042 / eukaryotic translation initiation factor 2 subunit beta  / reaction / complex






 

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