ENSGALG00000002790


Gallus gallus

Features
Gene ID: ENSGALG00000002790
  
Biological name :ABLIM3
  
Synonyms : ABLIM3 / actin binding LIM protein family member 3
  
Possible biological names infered from orthology : O94929 / Q69ZX8
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 8543269
Gene end: 8558770
  
Corresponding Affymetrix probe sets: Gga.6147.1.S1_at (Chicken Array)   GgaAffx.25637.1.S1_s_at (Chicken Array)   GgaAffx.25637.2.S1_at (Chicken Array)   GgaAffx.25637.2.S1_s_at (Chicken Array)   GgaAffx.25637.3.S1_s_at (Chicken Array)   GgaAffx.25637.4.S1_at (Chicken Array)   GgaAffx.25637.5.S1_s_at (Chicken Array)   GgaAffx.25637.7.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004401
NCBI entrez gene - 416201     See in Manteia.
RefSeq - XM_004944861
RefSeq - XM_015293685
RefSeq - XM_015293686
RefSeq - XM_015293688
RefSeq - XM_015293689
RefSeq - XM_015293690
RefSeq - XM_015293691
RefSeq - XM_015293692
RefSeq - XM_015293693
RefSeq - XM_015293694
RefSeq - XM_414527
RefSeq - XM_004944858
swissprot - E1C557
Ensembl - ENSGALG00000002790
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ablim3ENSDARG00000088168Danio rerio
 ABLIM3ENSG00000173210Homo sapiens
 Ablim3ENSMUSG00000032735Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ABLIM1 / actin-binding LIM protein 1 / O14639* / Q8K4G5*ENSGALG0000000904852
ABLIM2 / actin binding LIM protein family member 2 / Q6H8Q1* / Q8BL65* / actin-binding LIM protein 2*ENSGALG0000004344846
LPP / Q5F464 / Lipoma-preferred partner homolog / Q8BFW7* / Q93052* / LIM domain containing preferred translocation partner in lipoma*ENSGALG0000000733711
ZYX / Q04584 / Zyxin / Q15942* / Q62523*ENSGALG0000001468810
WTIP / WT1 interacting protein / A6NIX2* / Q7TQJ8*ENSGALG000000258649
LIMD1 / LIM domains containing 1 / Q9QXD8* / Q9UGP4* / LIM domain-containing protein 1 *ENSGALG000000356238
FBLIM1 / filamin binding LIM protein 1 / Q71FD7* / Q8WUP2*ENSGALG000000036368


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR003128  Villin headpiece
 IPR028449  Actin-binding LIM protein 3
 IPR032402  Putative adherens-junction anchoring domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0030032 lamellipodium assembly IEA
 biological_processGO:0030036 actin cytoskeleton organization IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:1903955 positive regulation of protein targeting to mitochondrion IEA
 cellular_componentGO:0001725 stress fiber IEA
 cellular_componentGO:0030027 lamellipodium IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr