ENSGALG00000035623


Gallus gallus

Features
Gene ID: ENSGALG00000035623
  
Biological name :LIMD1
  
Synonyms : LIMD1 / LIM domains containing 1
  
Possible biological names infered from orthology : LIM domain-containing protein 1 / Q9QXD8 / Q9UGP4
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 43016450
Gene end: 43038420
  
Corresponding Affymetrix probe sets: Gga.13259.1.S1_s_at (Chicken Array)   GgaAffx.23685.1.S1_at (Chicken Array)   GgaAffx.23685.1.S1_s_at (Chicken Array)   GgaAffx.23686.1.A1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050482
Ensembl peptide - ENSGALP00000057967
NCBI entrez gene - 420701     See in Manteia.
RefSeq - XM_418800
swissprot - A0A1D5PCJ3
swissprot - A0A1D5PYB7
Ensembl - ENSGALG00000035623
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01043952.1ENSDARG00000110954Danio rerio
 LIMD1ENSG00000144791Homo sapiens
 Limd1ENSMUSG00000025239Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WTIP / WT1 interacting protein / A6NIX2* / Q7TQJ8*ENSGALG0000002586474
LPP / Q5F464 / Lipoma-preferred partner homolog / Q8BFW7* / Q93052* / LIM domain containing preferred translocation partner in lipoma*ENSGALG0000000733744
ZYX / Q04584 / Zyxin / Q15942* / Q62523*ENSGALG0000001468841
FBLIM1 / filamin binding LIM protein 1 / Q71FD7* / Q8WUP2*ENSGALG0000000363634
ABLIM1 / actin-binding LIM protein 1 / O14639* / Q8K4G5*ENSGALG0000000904825
ABLIM2 / actin binding LIM protein family member 2 / Q6H8Q1* / Q8BL65* / actin-binding LIM protein 2*ENSGALG0000004344824
ABLIM3 / actin binding LIM protein family member 3 / O94929* / Q69ZX8*ENSGALG0000000279023


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR028734  LIM domain-containing protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0002076 osteoblast development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0008360 regulation of cell shape IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0035195 gene silencing by miRNA IEA
 biological_processGO:0035331 negative regulation of hippo signaling IEA
 biological_processGO:0045668 negative regulation of osteoblast differentiation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IEA
 biological_processGO:2000637 positive regulation of gene silencing by miRNA IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005912 adherens junction IEA
 cellular_componentGO:0005925 focal adhesion IEA
 cellular_componentGO:0016442 RISC complex IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr