ENSDARG00000088168


Danio rerio

Features
Gene ID: ENSDARG00000088168
  
Biological name :ablim3
  
Synonyms : ablim3 / actin binding LIM protein family, member 3
  
Possible biological names infered from orthology : O94929 / Q69ZX8
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 34634145
Gene end: 34771864
  
Corresponding Affymetrix probe sets: Dr.4838.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000125317
Ensembl peptide - ENSDARP00000141374
Ensembl peptide - ENSDARP00000140642
Ensembl peptide - ENSDARP00000125529
Ensembl peptide - ENSDARP00000116596
NCBI entrez gene - 566821     See in Manteia.
RefSeq - XM_005173321
RefSeq - XM_021481043
RefSeq Peptide - NP_001074067
swissprot - H0WEN9
swissprot - H0WF98
swissprot - B7ZVF6
swissprot - A1L269
swissprot - A0A0R4IXJ5
ZFIN ID - ZDB-GENE-070112-1122
Ensembl - ENSDARG00000088168
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABLIM3ENSGALG00000002790Gallus gallus
 ABLIM3ENSG00000173210Homo sapiens
 Ablim3ENSMUSG00000032735Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ablim1a / actin binding LIM protein 1a / ABLIM1* / O14639* / Q8K4G5* / actin binding LIM protein 1*ENSDARG0000006014950
ablim2 / actin binding LIM protein family, member 2 / Q6H8Q1* / Q8BL65* / actin-binding LIM protein 2*ENSDARG0000005522346
ablim1b / actin binding LIM protein 1b / ABLIM1* / O14639* / Q8K4G5* / actin binding LIM protein 1*ENSDARG0000004506431
dmtn / dematin actin binding protein / Q08495* / Q9WV69* / Dematin *ENSDARG0000001311020
trip6 / thyroid hormone receptor interactor 6 / Q15654* / Q9Z1Y4*ENSDARG0000006933111
zyx / zyxin / Q15942* / Q62523*ENSDARG0000007573310
wtip / A8DZE6 / WT1 interacting protein / A6NIX2* / Q7TQJ8*ENSDARG0000010360710
lpp / LIM domain containing preferred translocation partner in lipoma / Q8BFW7* / Q93052* / Lipoma-preferred partner homolog *ENSDARG0000002357810
ajuba / ajuba LIM protein / Q91XC0* / Q96IF1* / LIM domain-containing protein ajuba *ENSDARG000000778428
fblim1 / filamin binding LIM protein 1 / Q71FD7* / Q8WUP2*ENSDARG000000715587
BX465198.3 / DMTN* / Q08495* / dematin actin binding protein*ENSDARG000001164845
CABZ01043952.1 / LIMD1* / Q9UGP4* / LIM domains containing 1*ENSDARG000001109545


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR003128  Villin headpiece
 IPR028449  Actin-binding LIM protein 3
 IPR032402  Putative adherens-junction anchoring domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0007010 cytoskeleton organization IEA
 biological_processGO:0030036 actin cytoskeleton organization IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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