ENSGALG00000003378


Gallus gallus

Features
Gene ID: ENSGALG00000003378
  
Biological name :USP42
  
Synonyms : ubiquitin specific peptidase 42 / USP42
  
Possible biological names infered from orthology : B2RQC2 / Q9H9J4
  
Species: Gallus gallus
  
Chr. number: 14
Strand: -1
Band:
Gene start: 945679
Gene end: 958416
  
Corresponding Affymetrix probe sets: Gga.8734.1.S1_at (Chicken Array)   GgaAffx.2096.1.S1_at (Chicken Array)   GgaAffx.2100.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005328
NCBI entrez gene - 416431     See in Manteia.
RefSeq - XM_015294262
RefSeq - XM_015294263
RefSeq - XM_015294264
RefSeq - XM_015294265
RefSeq - XM_015294266
RefSeq - XM_015294261
swissprot - E1C4I0
Ensembl - ENSGALG00000003378
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp42ENSDARG00000077300Danio rerio
 USP42ENSG00000106346Homo sapiens
 Usp42ENSMUSG00000051306Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
USP36 / ubiquitin specific peptidase 36 / B1AQJ2* / Q9P275*ENSGALG0000003701823
USP51* / Q70EK9* / Q8CEG8* / A6NNY8* / B1AY15* / USP27X* / ubiquitin specific protease 51* / ubiquitin specific peptidase 51* / ubiquitin specific peptidase 27, X-linked* / ubiquitin specif...ENSGALG000000298179
USP44 / ubiquitin specific peptidase 44 / Q8C2S0* / Q9H0E7*ENSGALG000000114009
USP49* / Q6P9L4* / Q70CQ1* / ubiquitin specific peptidase 49*ENSGALG000000034618
USP3 / ubiquitin specific peptidase 3 / Q91W36* / Q9Y6I4*ENSGALG000000034278
USP49* / Q6P9L4* / Q70CQ1* / ubiquitin specific peptidase 49*ENSGALG000000441320


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR018200  Ubiquitin specific protease, conserved site
 IPR028889  Ubiquitin specific protease domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016578 histone deubiquitination IBA
 biological_processGO:0016579 protein deubiquitination IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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