ENSGALG00000003661


Gallus gallus

Features
Gene ID: ENSGALG00000003661
  
Biological name :SETX
  
Synonyms : senataxin / SETX
  
Possible biological names infered from orthology : A2AKX3 / Probable helicase senataxin / Q7Z333
  
Species: Gallus gallus
  
Chr. number: 17
Strand: -1
Band:
Gene start: 6964407
Gene end: 6992177
  
Corresponding Affymetrix probe sets: Gga.18015.1.S1_at (Chicken Array)   GgaAffx.2290.1.S1_s_at (Chicken Array)   GgaAffx.2290.3.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005791
Ensembl peptide - ENSGALP00000050873
NCBI entrez gene - 417170     See in Manteia.
RefSeq - XM_004945912
RefSeq - XM_015279754
RefSeq - XM_415453
swissprot - E1C4T7
swissprot - A0A1D5PDM8
Ensembl - ENSGALG00000003661
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 setxENSDARG00000022996Danio rerio
 SETXENSG00000107290Homo sapiens
 SetxENSMUSG00000043535Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AQR / aquarius intron-binding spliceosomal factor / O60306* / Q8CFQ3* / Intron-binding protein aquarius *ENSGALG000000098387
ZNFX1 / zinc finger NFX1-type containing 1 / Q8R151* / Q9P2E3*ENSGALG000000048597


Protein motifs (from Interpro)
Interpro ID Name
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade IEA
 biological_processGO:0006302 double-strand break repair IEA
 biological_processGO:0006353 DNA-templated transcription, termination IEA
 biological_processGO:0006369 termination of RNA polymerase II transcription IEA
 biological_processGO:0006376 mRNA splice site selection IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007623 circadian rhythm IEA
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway IEA
 biological_processGO:0010976 positive regulation of neuron projection development IEA
 biological_processGO:0033120 positive regulation of RNA splicing IEA
 biological_processGO:0034599 cellular response to oxidative stress IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043491 protein kinase B signaling IEA
 biological_processGO:0044344 cellular response to fibroblast growth factor stimulus IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060566 positive regulation of DNA-templated transcription, termination IEA
 biological_processGO:0070301 cellular response to hydrogen peroxide IEA
 biological_processGO:0071300 cellular response to retinoic acid IEA
 biological_processGO:2000144 positive regulation of DNA-templated transcription, initiation IEA
 biological_processGO:2000806 positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled IEA
 cellular_componentGO:0000228 nuclear chromosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0045171 intercellular bridge IEA
 molecular_functionGO:0001147 transcription termination site sequence-specific DNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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