ENSG00000107290


Homo sapiens

Features
Gene ID: ENSG00000107290
  
Biological name :SETX
  
Synonyms : Q7Z333 / senataxin / SETX
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q34.13
Gene start: 132261356
Gene end: 132354985
  
Corresponding Affymetrix probe sets: 201964_at (Human Genome U133 Plus 2.0 Array)   201965_s_at (Human Genome U133 Plus 2.0 Array)   232229_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000224140
Ensembl peptide - ENSP00000409143
NCBI entrez gene - 23064     See in Manteia.
OMIM - 608465
RefSeq - XM_017014497
RefSeq - NM_001351527
RefSeq - NM_015046
RefSeq - XM_011518407
RefSeq - XM_011518408
RefSeq - XM_017014495
RefSeq - XM_017014496
RefSeq - XM_005272171
RefSeq - XM_005272172
RefSeq - XM_005272173
RefSeq - XM_011518404
RefSeq - XM_011518405
RefSeq - XM_011518406
RefSeq Peptide - NP_055861
RefSeq Peptide - NP_001338456
swissprot - Q7Z333
swissprot - X6RI79
Ensembl - ENSG00000107290
  
Related genetic diseases (OMIM): 602433 - Amyotrophic lateral sclerosis 4, juvenile, 602433
  606002 - Spinocerebellar ataxia, autosomal recessive 1, 606002
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 setxENSDARG00000022996Danio rerio
 SETXENSGALG00000003661Gallus gallus
 SetxENSMUSG00000043535Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AQR / O60306 / aquarius intron-binding spliceosomal factorENSG000000217768
ZNFX1 / Q9P2E3 / zinc finger NFX1-type containing 1ENSG000001242018


Protein motifs (from Interpro)
Interpro ID Name
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000165 MAPK cascade IDA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006302 double-strand break repair IDA
 biological_processGO:0006310 DNA recombination IEA
 biological_processGO:0006353 DNA-templated transcription, termination IMP
 biological_processGO:0006369 termination of RNA polymerase II transcription IEA
 biological_processGO:0006376 mRNA splice site selection IMP
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007623 circadian rhythm IEA
 biological_processGO:0008543 fibroblast growth factor receptor signaling pathway IDA
 biological_processGO:0010976 positive regulation of neuron projection development IDA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0032508 DNA duplex unwinding IEA
 biological_processGO:0033120 positive regulation of RNA splicing IMP
 biological_processGO:0034599 cellular response to oxidative stress IDA
 biological_processGO:0043066 negative regulation of apoptotic process IDA
 biological_processGO:0043491 protein kinase B signaling IDA
 biological_processGO:0044344 cellular response to fibroblast growth factor stimulus IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0048511 rhythmic process IEA
 biological_processGO:0060566 positive regulation of DNA-templated transcription, termination IMP
 biological_processGO:0070301 cellular response to hydrogen peroxide IDA
 biological_processGO:0071300 cellular response to retinoic acid IDA
 biological_processGO:2000144 positive regulation of DNA-templated transcription, initiation IMP
 biological_processGO:2000806 positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled IMP
 cellular_componentGO:0000228 nuclear chromosome IDA
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0045171 intercellular bridge IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0001147 transcription termination site sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IC
 molecular_functionGO:0003678 DNA helicase activity TAS
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000524 Conjunctival telangiectasia "The presence of small (ca. 0.5-1.0 mm) dilated blood vessels near the surface of the mucous membranes of the conjunctiva." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000657 Oculomotor apraxia 
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 HP:0000764 Axonal degeneration 
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 HP:0001152 Saccadic smooth pursuit 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001266 Choreoathetosis 
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 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001284 Areflexia 
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002127 Upper motor neuron abnormality 
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 HP:0002141 Gait imbalance 
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 HP:0002169 Clonus 
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 HP:0002174 Postural tremor "A type of tremors that is triggered by holding a limb in a fixed position." [HPO:curators]
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 HP:0002346 Head tremor 
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 HP:0002355 Difficulty walking 
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 HP:0002366 Lower motor neuron signs 
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 HP:0002398 Degeneration of anterior horn cells 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0003073 Hypoalbuminemia "Reduction in the concentration of albumin in the blood." [HPO:curators]
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 HP:0003124 Hypercholesterolemia 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003405 Diffuse axonal swelling 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003474 Sensory impairment 
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 HP:0003477 Axonal neuropathy 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0003677 Slow progression 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0006254 Elevated alpha-fetoprotein "An elevation of alpha-feto protein, which is produced by the fetal liver and the yolk sac and may be increased in the serum of pregnant women with a fetus with some types of developmental anomaly such as open neural tube defects and omphalaocele." [HPO:curators]
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 HP:0006825 Pallor of dorsal columns of the spinal cord 
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 HP:0006855 Cerebellar vermis atrophy 
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 HP:0006879 Pontocerebellar atrophy 
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 HP:0006886 Decreased distal vibration sense "A decrease in the ability to perceive vibration in the distal portions of the limbs." [HPO:curators]
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 HP:0006937 Distal sensory loss of tactile and vibratory senses 
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 HP:0007141 Sensorimotor neuropathy 
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 HP:0007240 Progressive gait ataxia 
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 HP:0007256 Mild pyramidal signs 
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0010702 Increased immunoglobulin level "An abnormally increased level of immunoglobulin in blood." [HPO:probinson]
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 HP:0010831 Impaired proprioception "A loss or impairment of the sensation of the relative position of parts of the body and joint position." [HPO:probinson]
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 HP:0040078 Axonal degeneration 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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