ENSGALG00000004324


Gallus gallus

Features
Gene ID: ENSGALG00000004324
  
Biological name :SETD1B
  
Synonyms : histone-lysine N-methyltransferase SETD1B / SETD1B
  
Possible biological names infered from orthology : Q8CFT2 / Q9UPS6 / SET domain containing 1B
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 5682196
Gene end: 5723072
  
Corresponding Affymetrix probe sets: GgaAffx.2673.1.S1_at (Chicken Array)   GgaAffx.2691.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000038427
NCBI entrez gene - 416851     See in Manteia.
RefSeq - NM_001030661
RefSeq Peptide - NP_001025832
swissprot - F1NKV4
Ensembl - ENSGALG00000004324
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 setd1baENSDARG00000060847Danio rerio
 Q9UPS6ENSG00000139718Homo sapiens
 Q8CFT2ENSMUSG00000038384Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KMT2A* / P55200* / Q03164* / lysine methyltransferase 2A* / Mus musculus lysine (K)-specific methyltransferase 2A (Kmt2a), transcript variant 1, mRNA.*ENSGALG0000000681815
KMT2D* / O14686* / Q6PDK2* / lysine methyltransferase 2D* / Histone-lysine N-methyltransferase 2D *ENSGALG000000317028
KMT2D* / O14686* / Q6PDK2* / lysine methyltransferase 2D* / Histone-lysine N-methyltransferase 2D *ENSGALG000000355013
KMT2C* / Q8NEZ4* / lysine methyltransferase 2C*ENSGALG000000437383
KMT2C* / Q8NEZ4* / lysine methyltransferase 2C*ENSGALG000000326001


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR001214  SET domain
 IPR003616  Post-SET domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR024657  COMPASS complex Set1 subunit, N-SET domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032259 methylation IEA
 biological_processGO:0051568 histone H3-K4 methylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0035097 histone methyltransferase complex IEA
 cellular_componentGO:0048188 Set1C/COMPASS complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA
 molecular_functionGO:0042800 histone methyltransferase activity (H3-K4 specific) IEA


Pathways (from Reactome)
Pathway description
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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