ENSDARG00000060847


Danio rerio

Features
Gene ID: ENSDARG00000060847
  
Biological name :setd1ba
  
Synonyms : setd1ba / SET domain containing 1B, a
  
Possible biological names infered from orthology : Histone-lysine N-methyltransferase SETD1B / Q8CFT2 / Q9UPS6 / SETD1B / SET domain containing 1B
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 41986685
Gene end: 42022566
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000130529
Ensembl peptide - ENSDARP00000080600
NCBI entrez gene - 567970     See in Manteia.
RefSeq - NM_001045134
RefSeq - XM_005169219
RefSeq - XM_009305666
RefSeq - XM_009305667
RefSeq Peptide - NP_001038599
swissprot - F1Q6L6
swissprot - A0A0R4I9T6
ZFIN ID - ZDB-GENE-050309-289
Ensembl - ENSDARG00000060847
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SETD1BENSGALG00000004324Gallus gallus
 Q9UPS6ENSG00000139718Homo sapiens
 Q8CFT2ENSMUSG00000038384Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
setd1a / SET domain containing 1A / O15047* / AC149222.1*ENSDARG0000006003032
setd1bb / SET domain containing 1B, bENSDARG0000007724420
kmt2cb / lysine (K)-specific methyltransferase 2Cb / KMT2C* / Q8NEZ4* / lysine methyltransferase 2C*ENSDARG0000007556015
kmt2ca / lysine (K)-specific methyltransferase 2Ca / KMT2C* / Q8NEZ4* / lysine methyltransferase 2C*ENSDARG0000007931215
kmt2a / lysine (K)-specific methyltransferase 2A / P55200* / Q03164* / lysine methyltransferase 2A* / Mus musculus lysine (K)-specific methyltransferase 2A (Kmt2a), transcript variant 1, mRNA.*ENSDARG0000000453713
kmt2bb / lysine (K)-specific methyltransferase 2Bb / KMT2B* / O08550* / Q9UMN6* / lysine methyltransferase 2B* / Histone-lysine N-methyltransferase 2B *ENSDARG0000006069713
kmt2ba / lysine (K)-specific methyltransferase 2Ba / KMT2B* / O08550* / Q9UMN6* / lysine methyltransferase 2B* / Histone-lysine N-methyltransferase 2B *ENSDARG0000006296212
kmt2d / lysine (K)-specific methyltransferase 2D / O14686* / Q6PDK2* / lysine methyltransferase 2D* / Histone-lysine N-methyltransferase 2D *ENSDARG0000003706010


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR001214  SET domain
 IPR003616  Post-SET domain
 IPR024657  COMPASS complex Set1 subunit, N-SET domain
 IPR034468  Set1B, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032259 methylation IEA
 biological_processGO:0051568 histone H3-K4 methylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0048188 Set1C/COMPASS complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA


Pathways (from Reactome)
Pathway description
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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