ENSDARG00000060030


Danio rerio

Features
Gene ID: ENSDARG00000060030
  
Biological name :setd1a
  
Synonyms : setd1a / SET domain containing 1A
  
Possible biological names infered from orthology : AC149222.1 / O15047
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 32714157
Gene end: 32742578
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000108328
Ensembl peptide - ENSDARP00000115396
NCBI entrez gene - 556535     See in Manteia.
RefSeq - XM_005164080
RefSeq - XM_021473972
RefSeq - XM_001920817
RefSeq - XM_005164079
RefSeq - XM_021474303
RefSeq - XM_021474308
RefSeq - XM_021473973
RefSeq - XM_021473974
RefSeq - XM_021474302
swissprot - E9QGQ0
ZFIN ID - ZDB-GENE-080521-4
Ensembl - ENSDARG00000060030
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O15047ENSG00000099381Homo sapiens
 AC149222.1ENSMUSG00000108815Mus musculus
 Setd1aENSMUSG00000042308Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
setd1ba / SET domain containing 1B, a / Q9UPS6* / SETD1B* / Q8CFT2* / SET domain containing 1B* / Histone-lysine N-methyltransferase SETD1B *ENSDARG0000006084726
setd1bb / SET domain containing 1B, bENSDARG0000007724413
kmt2ca / lysine (K)-specific methyltransferase 2Ca / KMT2C* / Q8NEZ4* / lysine methyltransferase 2C*ENSDARG0000007931212
kmt2cb / lysine (K)-specific methyltransferase 2Cb / KMT2C* / Q8NEZ4* / lysine methyltransferase 2C*ENSDARG0000007556012
kmt2a / lysine (K)-specific methyltransferase 2A / P55200* / Q03164* / lysine methyltransferase 2A* / Mus musculus lysine (K)-specific methyltransferase 2A (Kmt2a), transcript variant 1, mRNA.*ENSDARG0000000453711
kmt2bb / lysine (K)-specific methyltransferase 2Bb / KMT2B* / O08550* / Q9UMN6* / lysine methyltransferase 2B* / Histone-lysine N-methyltransferase 2B *ENSDARG000000606979
kmt2d / lysine (K)-specific methyltransferase 2D / O14686* / Q6PDK2* / lysine methyltransferase 2D* / Histone-lysine N-methyltransferase 2D *ENSDARG000000370609
kmt2ba / lysine (K)-specific methyltransferase 2Ba / KMT2B* / O08550* / Q9UMN6* / lysine methyltransferase 2B* / Histone-lysine N-methyltransferase 2B *ENSDARG000000629628


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR001214  SET domain
 IPR003616  Post-SET domain
 IPR024657  COMPASS complex Set1 subunit, N-SET domain
 IPR034467  Set1A, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032259 methylation IEA
 biological_processGO:0034968 histone lysine methylation IEA
 biological_processGO:0051568 histone H3-K4 methylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0048188 Set1C/COMPASS complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA
 molecular_functionGO:0042800 histone methyltransferase activity (H3-K4 specific) IEA


Pathways (from Reactome)
Pathway description
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr