ENSGALG00000004529


Gallus gallus

Features
Gene ID: ENSGALG00000004529
  
Biological name :VPS29
  
Synonyms : Q5ZIL2 / Vacuolar protein sorting-associated protein 29 / VPS29
  
Possible biological names infered from orthology : Q9QZ88 / Q9UBQ0 / VPS29, retromer complex component
  
Species: Gallus gallus
  
Chr. number: 15
Strand: -1
Band:
Gene start: 5981277
Gene end: 5986395
  
Corresponding Affymetrix probe sets: Gga.2294.1.S1_s_at (Chicken Array)   GgaAffx.12875.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044146
Ensembl peptide - ENSGALP00000064628
Ensembl peptide - ENSGALP00000063918
Ensembl peptide - ENSGALP00000062429
Ensembl peptide - ENSGALP00000062166
Ensembl peptide - ENSGALP00000061585
Ensembl peptide - ENSGALP00000058628
Ensembl peptide - ENSGALP00000054550
Ensembl peptide - ENSGALP00000038322
NCBI entrez gene - 416867     See in Manteia.
RefSeq - NM_001007837
RefSeq - XM_015275294
RefSeq - XM_015275295
RefSeq - XM_015275296
RefSeq Peptide - NP_001007838
swissprot - A0A1L1RIQ6
swissprot - A0A1D5PNV6
swissprot - A0A1L1S0G5
swissprot - Q5ZIL2
swissprot - F1NNQ3
swissprot - A0A1L1RYJ3
swissprot - A0A1L1RUC8
swissprot - A0A1L1RTM3
swissprot - A0A1L1RS02
Ensembl - ENSGALG00000004529
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps29ENSDARG00000069521Danio rerio
 VPS29ENSG00000111237Homo sapiens
 Vps29ENSMUSG00000029462Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VPS29L / VPS29* / Q9QZ88* / Q9UBQ0* / VPS29, retromer complex component*ENSGALG0000000595170


Protein motifs (from Interpro)
Interpro ID Name
 IPR000979  Phosphodiesterase MJ0936/Vps29
 IPR024654  Calcineurin-like phosphoesterase domain, lpxH type
 IPR029052  Metallo-dependent phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030904 retromer complex IEA
 molecular_functionGO:0008270 zinc ion binding IBA
 molecular_functionGO:0008565 protein transporter activity IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
WNT ligand biogenesis and trafficking


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000004174 VPS26A / VPS26, retromer complex component A / O75436* / P40336*  / complex
 ENSGALG00000015304 SNX3 / sorting nexin 3 / O60493*  / reaction / complex






 

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