ENSDARG00000069521


Danio rerio

Features
Gene ID: ENSDARG00000069521
  
Biological name :vps29
  
Synonyms : Q7ZV68 / vacuolar protein sorting 29 homolog (S. cerevisiae) / vps29
  
Possible biological names infered from orthology : Q9QZ88 / Q9UBQ0 / VPS29, retromer complex component
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 17005737
Gene end: 17011574
  
Corresponding Affymetrix probe sets: Dr.4166.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000092020
NCBI entrez gene - 573437     See in Manteia.
RefSeq - XM_005161202
RefSeq - NM_200037
RefSeq Peptide - NP_956331
swissprot - Q7ZV68
ZFIN ID - ZDB-GENE-030131-8764
Ensembl - ENSDARG00000069521
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS29ENSGALG00000004529Gallus gallus
 VPS29LENSGALG00000005951Gallus gallus
 VPS29ENSG00000111237Homo sapiens
 Vps29ENSMUSG00000029462Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000979  Phosphodiesterase MJ0936/Vps29
 IPR024654  Calcineurin-like phosphoesterase domain, lpxH type
 IPR028661  Vacuolar protein sorting-associated protein 29
 IPR029052  Metallo-dependent phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030904 retromer complex IBA
 molecular_functionGO:0008270 zinc ion binding IBA
 molecular_functionGO:0008565 protein transporter activity IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
WNT ligand biogenesis and trafficking


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000009534 wls / wntless Wnt ligand secretion mediator / Q5T9L3* / Q6DID7*  / reaction / complex
 ENSDARG00000008678 snx3 / sorting nexin 3 / O60493*  / reaction / complex
 ENSDARG00000008224 vps35 / vacuolar protein sorting 35 homolog (S. cerevisiae) / Q96QK1* / Q9EQH3* / VPS35, retromer complex component*  / complex
 ENSDARG00000056549 Q6TNP8 / vps26a / vacuolar protein sorting 26 homolog A (S. pombe) / O75436* / P40336* / VPS26, retromer complex component A*  / complex






 

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