ENSDARG00000008224


Danio rerio

Features
Gene ID: ENSDARG00000008224
  
Biological name :vps35
  
Synonyms : vacuolar protein sorting 35 homolog (S. cerevisiae) / vps35
  
Possible biological names infered from orthology : Q96QK1 / Q9EQH3 / VPS35, retromer complex component
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 41757462
Gene end: 41812355
  
Corresponding Affymetrix probe sets: Dr.26341.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000143145
Ensembl peptide - ENSDARP00000003960
NCBI entrez gene - 561697     See in Manteia.
RefSeq - NM_001025517
RefSeq Peptide - NP_001020688
swissprot - A0A1L1QZM6
swissprot - Q6ZM34
ZFIN ID - ZDB-GENE-030131-2042
Ensembl - ENSDARG00000008224
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS35ENSGALG00000004375Gallus gallus
 VPS35ENSG00000069329Homo sapiens
 Vps35ENSMUSG00000031696Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005378  Vacuolar protein sorting-associated protein 35
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030906 retromer, cargo-selective complex IEA


Pathways (from Reactome)
Pathway description
WNT ligand biogenesis and trafficking


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000009534 wls / wntless Wnt ligand secretion mediator / Q5T9L3* / Q6DID7*  / complex / reaction
 ENSDARG00000008678 snx3 / sorting nexin 3 / O60493*  / complex / reaction
 ENSDARG00000056549 Q6TNP8 / vps26a / vacuolar protein sorting 26 homolog A (S. pombe) / O75436* / P40336* / VPS26, retromer complex component A*  / complex
 ENSDARG00000069521 vps29 / Q7ZV68 / vacuolar protein sorting 29 homolog (S. cerevisiae) / Q9UBQ0* / Q9QZ88* / VPS29, retromer complex component*  / complex






 

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contact: otassy@igbmc.fr