ENSDARG00000056549


Danio rerio

Features
Gene ID: ENSDARG00000056549
  
Biological name :vps26a
  
Synonyms : Q6TNP8 / vacuolar protein sorting 26 homolog A (S. pombe) / vps26a
  
Possible biological names infered from orthology : O75436 / P40336 / VPS26, retromer complex component A
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 23058268
Gene end: 23067381
  
Corresponding Affymetrix probe sets: Dr.19381.1.S1_at (Zebrafish Array)   NM_200907_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000072602
NCBI entrez gene - 393881     See in Manteia.
RefSeq - NM_200907
RefSeq Peptide - NP_957201
swissprot - A9JRS5
swissprot - Q6TNP8
ZFIN ID - ZDB-GENE-040426-1108
Ensembl - ENSDARG00000056549
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS26AENSGALG00000004174Gallus gallus
 O75436ENSG00000122958Homo sapiens
 P40336ENSMUSG00000020078Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q7ZV03 / vps26b / VPS26 retromer complex component B / Q4G0F5* / Q8C0E2*ENSDARG0000001582368
vps26bl / vacuolar protein sorting 26 homolog B, like / Q8C0E2* / VPS26B* / Q4G0F5* / VPS26, retromer complex component B*ENSDARG0000005543367


Protein motifs (from Interpro)
Interpro ID Name
 IPR028934  Vacuolar protein sorting protein 26 related


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0007165 signal transduction IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome ISS
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030904 retromer complex IBA
 cellular_componentGO:0031982 vesicle ISS
 molecular_functionGO:0008565 protein transporter activity IBA


Pathways (from Reactome)
Pathway description
WNT ligand biogenesis and trafficking


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000009534 wls / wntless Wnt ligand secretion mediator / Q5T9L3* / Q6DID7*  / reaction / complex
 ENSDARG00000008678 snx3 / sorting nexin 3 / O60493*  / complex / reaction
 ENSDARG00000008224 vps35 / vacuolar protein sorting 35 homolog (S. cerevisiae) / Q96QK1* / Q9EQH3* / VPS35, retromer complex component*  / complex
 ENSDARG00000069521 vps29 / Q7ZV68 / vacuolar protein sorting 29 homolog (S. cerevisiae) / Q9UBQ0* / Q9QZ88* / VPS29, retromer complex component*  / complex






 

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