ENSGALG00000005951


Gallus gallus

Features
Gene ID: ENSGALG00000005951
  
Biological name :VPS29L
  
Synonyms : VPS29L
  
Possible biological names infered from orthology : Q9QZ88 / Q9UBQ0 / VPS29 / VPS29, retromer complex component
  
Species: Gallus gallus
  
Chr. number: 15
Strand: -1
Band:
Gene start: 8000035
Gene end: 8002344
  
Corresponding Affymetrix probe sets: Gga.5586.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009555
NCBI entrez gene - 416931     See in Manteia.
RefSeq - NM_001277505
RefSeq Peptide - NP_001264434
swissprot - E1C8L9
Ensembl - ENSGALG00000005951
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps29ENSDARG00000069521Danio rerio
 VPS29ENSG00000111237Homo sapiens
 Vps29ENSMUSG00000029462Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VPS29 / Q5ZIL2 / Vacuolar protein sorting-associated protein 29 / Q9UBQ0* / Q9QZ88* / VPS29, retromer complex component*ENSGALG0000000452988


Protein motifs (from Interpro)
Interpro ID Name
 IPR000979  Phosphodiesterase MJ0936/Vps29
 IPR024654  Calcineurin-like phosphoesterase domain, lpxH type
 IPR029052  Metallo-dependent phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030904 retromer complex IBA
 molecular_functionGO:0008270 zinc ion binding IBA
 molecular_functionGO:0008565 protein transporter activity IBA


Pathways (from Reactome)
Pathway description
WNT ligand biogenesis and trafficking


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000004174 VPS26A / VPS26, retromer complex component A / O75436* / P40336*  / complex
 ENSGALG00000015304 SNX3 / sorting nexin 3 / O60493*  / reaction / complex






 

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contact: otassy@igbmc.fr