ENSMUSG00000029462


Mus musculus

Features
Gene ID: ENSMUSG00000029462
  
Biological name :Vps29
  
Synonyms : Q9QZ88 / Vps29 / VPS29 retromer complex component
  
Possible biological names infered from orthology : Q9UBQ0
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: F
Gene start: 122354369
Gene end: 122364984
  
Corresponding Affymetrix probe sets: 10525381 (MoGene1.0st)   1417659_at (Mouse Genome 430 2.0 Array)   1417660_s_at (Mouse Genome 430 2.0 Array)   1435565_at (Mouse Genome 430 2.0 Array)   1440641_at (Mouse Genome 430 2.0 Array)   1455302_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000113345
Ensembl peptide - ENSMUSP00000123593
Ensembl peptide - ENSMUSP00000121020
Ensembl peptide - ENSMUSP00000118991
Ensembl peptide - ENSMUSP00000113525
Ensembl peptide - ENSMUSP00000107358
Ensembl peptide - ENSMUSP00000112579
NCBI entrez gene - 56433     See in Manteia.
MGI - MGI:1928344
RefSeq - XM_006530427
RefSeq - NM_001347453
RefSeq - NM_001359226
RefSeq - NM_019780
RefSeq Peptide - NP_062754
RefSeq Peptide - NP_001334382
RefSeq Peptide - NP_001346155
swissprot - D3YYD5
swissprot - D3YW98
swissprot - D3Z645
swissprot - H7BXA2
swissprot - Q9QZ88
swissprot - D6RH43
Ensembl - ENSMUSG00000029462
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps29ENSDARG00000069521Danio rerio
 VPS29ENSGALG00000004529Gallus gallus
 VPS29LENSGALG00000005951Gallus gallus
 VPS29ENSG00000111237Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000979  Phosphodiesterase MJ0936/Vps29
 IPR024654  Calcineurin-like phosphoesterase domain, lpxH type
 IPR028661  Vacuolar protein sorting-associated protein 29
 IPR029052  Metallo-dependent phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006896 Golgi to vacuole transport ISS
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 biological_processGO:1990126 retrograde transport, endosome to plasma membrane ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030904 retromer complex IEA
 cellular_componentGO:0030906 retromer, cargo-selective complex ISO
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IBA
 molecular_functionGO:0008565 protein transporter activity IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
WNT ligand biogenesis and trafficking


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000028173 Wls / Q6DID7 / wntless WNT ligand secretion mediator / Q5T9L3*  / reaction / complex
 ENSMUSG00000020078 P40336 / Vps26a / VPS26 retromer complex component A / O75436*  / complex
 ENSMUSG00000031696 Vps35 / Q9EQH3 / VPS35 retromer complex component / Q96QK1*  / complex
 ENSMUSG00000019804 Snx3 / sorting nexin 3 / O60493*  / reaction / complex






 

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