Manteia

ENSMUSG00000019804

Mus musculus

Features

Gene ID:	ENSMUSG00000019804

Biological name :	Snx3

Synonyms :	Snx3 / sorting nexin 3

Possible biological names infered from orthology :	O60493

Species:	Mus musculus

Chr. number:	10
Strand:	1
Band:	B2
Gene start:	42502030
Gene end:	42535381

Corresponding Affymetrix probe sets:	10362823 (MoGene1.0st) 1422480_at (Mouse Genome 430 2.0 Array)

Cross references:	Ensembl peptide - ENSMUSP00000019939 Ensembl peptide - ENSMUSP00000101139 Ensembl peptide - ENSMUSP00000101138 NCBI entrez gene - 54198 See in Manteia. MGI - MGI:1860188 RefSeq - NM_017472 RefSeq Peptide - NP_059500 swissprot - D3Z789 swissprot - D3Z6Z0 swissprot - Q78ZM0 Ensembl - ENSMUSG00000019804

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Protein motifs (from Interpro)

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0009617	response to bacterium	IEA
biological_process	GO:0010324	membrane invagination	IEA
biological_process	GO:0022615	protein to membrane docking	IEA
biological_process	GO:0030111	regulation of Wnt signaling pathway	IEA
biological_process	GO:0042177	negative regulation of protein catabolic process	IEA
biological_process	GO:0046597	negative regulation of viral entry into host cell	IEA
biological_process	GO:0050765	negative regulation of phagocytosis	IEA
biological_process	GO:0051224	negative regulation of protein transport	IEA
biological_process	GO:0070676	intralumenal vesicle formation	IEA
biological_process	GO:2000642	negative regulation of early endosome to late endosome transport	IEA
cellular_component	GO:0005737	cytoplasm	IEA
cellular_component	GO:0005769	early endosome	IEA
cellular_component	GO:0005829	cytosol	IEA
cellular_component	GO:0010008	endosome membrane	IEA
cellular_component	GO:0030136	clathrin-coated vesicle	IEA
cellular_component	GO:0030904	retromer complex	IEA
cellular_component	GO:0031901	early endosome membrane	IEA
cellular_component	GO:0032009	early phagosome	IEA
molecular_function	GO:0019903	protein phosphatase binding	IEA
molecular_function	GO:0032266	phosphatidylinositol-3-phosphate binding	IEA
molecular_function	GO:0035091	phosphatidylinositol binding	IEA

Pathways (from Reactome)

Pathway description

WNT ligand biogenesis and trafficking

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
MP:0011100	complete preweaning lethality	"death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]	Show Allelic Composition: Rad9a^{tm1.1(KOMP)Wtsi}/Rad9a^{tm1.1(KOMP)Wtsi} Genetic Background: C57BL/6N-Rad9a^{tm1.1(KOMP)Wtsi}/Bay

Interacting proteins (from Reactome)

Interactor ID	Name	Interaction type
ENSMUSG00000031826	Usp10 / P52479 / ubiquitin specific peptidase 10 / Q14694*	/ complex
ENSMUSG00000031696	Vps35 / Q9EQH3 / VPS35 retromer complex component / Q96QK1*	/ complex / reaction
ENSMUSG00000028173	Wls / Q6DID7 / wntless WNT ligand secretion mediator / Q5T9L3*	/ reaction / complex
ENSMUSG00000020078	P40336 / Vps26a / VPS26 retromer complex component A / O75436*	/ complex / reaction
ENSMUSG00000029462	Vps29 / Q9QZ88 / VPS29 retromer complex component / Q9UBQ0*	/ reaction / complex

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr