ENSGALG00000004667


Gallus gallus

Features
Gene ID: ENSGALG00000004667
  
Biological name :SMG7
  
Synonyms : SMG7 / SMG7, nonsense mediated mRNA decay factor
  
Possible biological names infered from orthology : Protein SMG7 / Q5RJH6 / Q92540
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 7592133
Gene end: 7635500
  
Corresponding Affymetrix probe sets: Gga.12846.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007425
Ensembl peptide - ENSGALP00000054235
Ensembl peptide - ENSGALP00000048660
NCBI entrez gene - 424444     See in Manteia.
RefSeq - XM_004943272
RefSeq - XM_015290545
RefSeq - XM_015290546
RefSeq - XM_015290547
swissprot - A0A1D5P7H0
swissprot - F1NG37
swissprot - A0A1D5PMZ7
Ensembl - ENSGALG00000004667
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smg7ENSDARG00000060767Danio rerio
 SMG7ENSG00000116698Homo sapiens
 Smg7ENSMUSG00000042772Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMG6 / SMG6, nonsense mediated mRNA decay factor / P61406* / Q86US8* / Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)*ENSGALG0000000310815
SMG5 / SMG5, nonsense mediated mRNA decay factor / Q6ZPY2* / Q9UPR3* / Protein SMG5 *ENSGALG0000002991812


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR018834  DNA/RNA-binding domain, Est1-type
 IPR019458  Telomerase activating protein Est1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IBA
 biological_processGO:0006406 mRNA export from nucleus IBA
 biological_processGO:0007004 telomere maintenance via telomerase IBA
 biological_processGO:0043487 regulation of RNA stability IBA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005697 telomerase holoenzyme complex IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0045111 intermediate filament cytoskeleton IEA
 molecular_functionGO:0004540 ribonuclease activity IBA
 molecular_functionGO:0042162 telomeric DNA binding IEA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IBA
 molecular_functionGO:0051721 protein phosphatase 2A binding IEA
 molecular_functionGO:0070034 telomerase RNA binding IBA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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