ENSGALG00000006298


Gallus gallus

Features
Gene ID: ENSGALG00000006298
  
Biological name :ATG4B
  
Synonyms : ATG4B / Cysteine protease ATG4B / Q6PZ02
  
Possible biological names infered from orthology : autophagy related 4B cysteine peptidase / Q9Y4P1
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 4782699
Gene end: 4802426
  
Corresponding Affymetrix probe sets: Gga.16354.1.S1_s_at (Chicken Array)   Gga.16354.1.S2_s_at (Chicken Array)   GgaAffx.12315.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000059674
Ensembl peptide - ENSGALP00000010165
NCBI entrez gene - 404750     See in Manteia.
RefSeq - XM_015276847
RefSeq - NM_213573
RefSeq Peptide - NP_998738
swissprot - A0A1L1RLP6
swissprot - Q6PZ02
swissprot - F1NW36
Ensembl - ENSGALG00000006298
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atg4bENSDARG00000052104Danio rerio
 ATG4BENSG00000168397Homo sapiens
 Atg4bENSMUSG00000026280Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ATG4A / cysteine protease ATG4A isoform 2 / Q8WYN0* / Q8C9S8* / Atg4a-ps* / Cysteine protease ATG4A * / autophagy related 4A, pseudogene* / autophagy related 4A cysteine peptidase*ENSGALG0000000828254
ATG4C / autophagy related 4C cysteine peptidase / Q811C2* / Q96DT6* / Cysteine protease ATG4C *ENSGALG0000001098530


Protein motifs (from Interpro)
Interpro ID Name
 IPR005078  Peptidase C54
 IPR032916  Cysteine protease ATG4B, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IEA
 biological_processGO:0000422 autophagy of mitochondrion IBA
 biological_processGO:0006501 C-terminal protein lipidation IBA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006612 protein targeting to membrane IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0044804 autophagy of nucleus IBA
 biological_processGO:0051697 protein delipidation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0004175 endopeptidase activity IEA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity IBA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Macroautophagy


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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