ENSGALG00000008857


Gallus gallus

Features
Gene ID: ENSGALG00000008857
  
Biological name :PRPF4
  
Synonyms : pre-mRNA processing factor 4 / PRPF4
  
Possible biological names infered from orthology : O43172 / Q9DAW6
  
Species: Gallus gallus
  
Chr. number: 17
Strand: -1
Band:
Gene start: 1963737
Gene end: 1971395
  
Corresponding Affymetrix probe sets: Gga.1886.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014372
Ensembl peptide - ENSGALP00000064494
NCBI entrez gene - 417270     See in Manteia.
RefSeq - XM_415544
swissprot - A0A1L1S034
swissprot - F1NNQ9
Ensembl - ENSGALG00000008857
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf4ENSDARG00000067639Danio rerio
 PRPF4ENSG00000136875Homo sapiens
 Prpf4ENSMUSG00000066148Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SPAG16 / sperm associated antigen 16 / Q8K450* / Q8N0X2* / Sperm-associated antigen 16 protein *ENSGALG0000000314815
PRPF19* / Q99KP6* / Q9UMS4* / pre-mRNA processing factor 19*ENSGALG0000003653014


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR014906  Pre-mRNA processing factor 4 (PRP4)-like
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR027106  U4/U6 small nuclear ribonucleoprotein Prp4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IEA
 cellular_componentGO:0071001 U4/U6 snRNP IEA
 cellular_componentGO:0097525 spliceosomal snRNP complex IEA
 molecular_functionGO:0017070 U6 snRNA binding IBA
 molecular_functionGO:0030621 U4 snRNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000004874 PPIH / peptidylprolyl isomerase H / Q9D868* / Gm7879* / O43447* / Peptidyl-prolyl cis-trans isomerase H *  / complex






 

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