ENSDARG00000067639


Danio rerio

Features
Gene ID: ENSDARG00000067639
  
Biological name :prpf4
  
Synonyms : PRP4 pre-mRNA processing factor 4 homolog (yeast) / prpf4
  
Possible biological names infered from orthology : O43172 / pre-mRNA processing factor 4 / Q9DAW6
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 57442271
Gene end: 57453791
  
Corresponding Affymetrix probe sets: Dr.909.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000088166
NCBI entrez gene - 326944     See in Manteia.
RefSeq - NM_199755
RefSeq Peptide - NP_956049
swissprot - Q6PH45
ZFIN ID - ZDB-GENE-030131-5143
Ensembl - ENSDARG00000067639
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRPF4ENSGALG00000008857Gallus gallus
 PRPF4ENSG00000136875Homo sapiens
 Prpf4ENSMUSG00000066148Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prpf19 / pre-mRNA processing factor 19 / Q99KP6* / Q9UMS4*ENSDARG0000001523920


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR014906  Pre-mRNA processing factor 4 (PRP4)-like
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0009792 embryo development ending in birth or egg hatching IMP
 biological_processGO:0043009 chordate embryonic development IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 molecular_functionGO:0017070 U6 snRNA binding IBA
 molecular_functionGO:0030621 U4 snRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism deformed , abnormal
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 ZFA:0009127 photoreceptor cell photoreceptor cell photoreceptor outer segment decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000041530 ppih / peptidylprolyl isomerase H (cyclophilin H) / Q9D868* / Gm7879* / O43447* / peptidylprolyl isomerase H* / Peptidyl-prolyl cis-trans isomerase H *  / complex






 

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contact: otassy@igbmc.fr