ENSG00000136875


Homo sapiens

Features
Gene ID: ENSG00000136875
  
Biological name :PRPF4
  
Synonyms : O43172 / pre-mRNA processing factor 4 / PRPF4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q32
Gene start: 113275343
Gene end: 113292905
  
Corresponding Affymetrix probe sets: 209161_at (Human Genome U133 Plus 2.0 Array)   209162_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000363313
Ensembl peptide - ENSP00000363315
NCBI entrez gene - 9128     See in Manteia.
OMIM - 607795
RefSeq - NM_004697
RefSeq - NM_001244926
RefSeq - NM_001322266
RefSeq - NM_001322267
RefSeq Peptide - NP_001231855
RefSeq Peptide - NP_001309195
RefSeq Peptide - NP_001309196
RefSeq Peptide - NP_004688
swissprot - O43172
swissprot - Q5T1M7
Ensembl - ENSG00000136875
  
Related genetic diseases (OMIM): 615922 - Retinitis pigmentosa 70, 615922
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prpf4ENSDARG00000067639Danio rerio
 PRPF4ENSGALG00000008857Gallus gallus
 Prpf4ENSMUSG00000066148Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8N0X2 / SPAG16 / sperm associated antigen 16ENSG0000014445120
PRPF19 / Q9UMS4 / pre-mRNA processing factor 19ENSG0000011010719


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR014906  Pre-mRNA processing factor 4 (PRP4)-like
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR027106  U4/U6 small nuclear ribonucleoprotein Prp4
 IPR036285  PRP4-like superfamily
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions NAS
 biological_processGO:0000398 mRNA splicing, via spliceosome IC
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing TAS
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IC
 cellular_componentGO:0015030 Cajal body IDA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IDA
 cellular_componentGO:0071001 U4/U6 snRNP IDA
 cellular_componentGO:0097525 spliceosomal snRNP complex IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017070 U6 snRNA binding IBA
 molecular_functionGO:0030621 U4 snRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000543 Pale optic disks 
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 HP:0000546 Retinal degeneration 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000171960 PPIH / O43447 / peptidylprolyl isomerase H  / complex
 ENSG00000117360 PRPF3 / O43395 / pre-mRNA processing factor 3  / complex






 

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