ENSGALG00000009850


Gallus gallus

Features
Gene ID: ENSGALG00000009850
  
Biological name :NOVA1
  
Synonyms : NOVA1 / NOVA alternative splicing regulator 1
  
Possible biological names infered from orthology : P51513 / Q9JKN6 / RNA-binding protein Nova-1
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 32870788
Gene end: 32999065
  
Corresponding Affymetrix probe sets: Gga.12188.1.S1_at (Chicken Array)   Gga.16732.1.S1_at (Chicken Array)   Gga.9627.1.S1_at (Chicken Array)   GgaAffx.23054.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000041336
Ensembl peptide - ENSGALP00000064747
Ensembl peptide - ENSGALP00000059720
Ensembl peptide - ENSGALP00000043533
Ensembl peptide - ENSGALP00000015995
Ensembl peptide - ENSGALP00000040996
NCBI entrez gene - 423300     See in Manteia.
RefSeq - XM_015287355
RefSeq - NM_001199712
RefSeq - NM_001199713
RefSeq Peptide - NP_001186642
RefSeq Peptide - NP_001186641
swissprot - A0A1L1S0U0
swissprot - R4GG35
swissprot - A0A1L1RLT8
swissprot - F1NP95
swissprot - A0A1D5NT80
swissprot - R4GH08
Ensembl - ENSGALG00000009850
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOVA1ENSG00000139910Homo sapiens
 Nova1ENSMUSG00000021047Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5ZIQ3 / HNRNPKL / Heterogeneous nuclear ribonucleoprotein K / HNRNPK* / P61978* / P61979* / Heteroous nuclear ribonucleoprotein K *ENSGALG0000004008620
HNRNPK* / P61978* / P61979* / Heteroous nuclear ribonucleoprotein K * / heterogeneous nuclear ribonucleoprotein K*ENSGALG0000001259120
PCBP3 / poly(rC) binding protein 3 / P57721* / P57722* / Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA.*ENSGALG0000000439419
PCBP4 / poly(rC) binding protein 4 / P57723*ENSGALG0000002769516
PCBP2* / PCBP1* / Q15366* / P60335* / Q15365* / poly(rC) binding protein 1* / poly(rC) binding protein 2*ENSGALG0000004103015
ENSGALG0000001315512


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR033086  RNA-binding protein Nova-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0051252 regulation of RNA metabolic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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