ENSG00000139910


Homo sapiens

Features
Gene ID: ENSG00000139910
  
Biological name :NOVA1
  
Synonyms : NOVA1 / NOVA alternative splicing regulator 1 / P51513
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q12
Gene start: 26443093
Gene end: 26597754
  
Corresponding Affymetrix probe sets: 205794_s_at (Human Genome U133 Plus 2.0 Array)   207437_at (Human Genome U133 Plus 2.0 Array)   231614_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000459545
Ensembl peptide - ENSP00000449113
Ensembl peptide - ENSP00000449185
Ensembl peptide - ENSP00000299472
Ensembl peptide - ENSP00000342387
Ensembl peptide - ENSP00000408914
Ensembl peptide - ENSP00000438875
Ensembl peptide - ENSP00000447391
Ensembl peptide - ENSP00000448144
Ensembl peptide - ENSP00000448157
Ensembl peptide - ENSP00000448956
NCBI entrez gene - 4857     See in Manteia.
OMIM - 602157
RefSeq - XM_017021349
RefSeq - NM_002515
RefSeq - NM_006489
RefSeq - NM_006491
RefSeq - XM_011536800
RefSeq - XM_017021342
RefSeq - XM_017021343
RefSeq - XM_017021344
RefSeq - XM_017021345
RefSeq - XM_017021346
RefSeq - XM_017021347
RefSeq - XM_017021348
RefSeq Peptide - NP_006480
RefSeq Peptide - NP_006482
RefSeq Peptide - NP_002506
swissprot - F8W659
swissprot - G8JLA5
swissprot - H0YHZ1
swissprot - I3L2B5
swissprot - J3KQU3
swissprot - F8VW64
swissprot - P51513
swissprot - F8VWX1
swissprot - F8VYI3
Ensembl - ENSG00000139910
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOVA1ENSGALG00000009850Gallus gallus
 Nova1ENSMUSG00000021047Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NOVA2 / Q9UNW9 / NOVA alternative splicing regulator 2ENSG0000010496771
HNRNPK / P61978 / heterogeneous nuclear ribonucleoprotein KENSG0000016511921
PCBP3 / P57721 / poly(rC) binding protein 3ENSG0000018357021
PCBP1 / Q15365 / poly(rC) binding protein 1ENSG0000016956419
PCBP2 / Q15366 / poly(rC) binding protein 2ENSG0000019711119
PCBP4 / P57723 / poly(rC) binding protein 4ENSG0000009009718


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR009019  K homology domain superfamily, prokaryotic type
 IPR015946  K homology domain-like, alpha/beta
 IPR033086  RNA-binding protein Nova-1
 IPR036612  K Homology domain, type 1 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007626 locomotory behavior TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0051252 regulation of RNA metabolic process IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr